BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935955
Length=265
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02140.1 | Symbols: LCR72, PDF2.6 | low-molecular-weight cys... 453 4e-127
> AT2G02140.1 | Symbols: LCR72, PDF2.6 | low-molecular-weight cysteine-rich
72 | chr2:544707-545429 FORWARD LENGTH=530
Length=530
Score = 453 bits (245), Expect = 4e-127
Identities = 257/263 (98%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 1 TTTGTATCTTAATCTCTTAAAAAATGAAGCTCTCTCTGCGTTTGATCTCAGCCCTTCTCC 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TTTGTATCTTAATCTCTTTAAAAATGAAGCTCTCTCTGCGTTTGATCTCAGCCCTTCTCA 85
Query 61 TCTCAGTCATGCTCCTCTTTGCCACAGGAATGGGTCCTGTGGAAGCAAGAACGTGTGAGT 120
| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 86 TGTCGGTCATGCTCCTCTTCGCCACAGGAATGGGTCCTGTGGAAGCAAGAACTTGTGAGT 145
Query 121 CACCAAGTAACAAGTTCCAAGGAGTTTGTCTCAACTCACAGAGCTGTGCCAAAGCTTGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CACCAAGTAACAAGTTCCAAGGAGTTTGTCTCAACTCACAGAGCTGTGCCAAAGCTTGCC 205
Query 181 CTAGCGAAGGTTTTTCAGGCGGTCGATGTAGTAGTCTCCGTTGCTACTGCTCCAAAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTAGCGAAGGTTTTTCAGGCGGTCGATGTAGTAGTCTCCGTTGCTACTGCTCCAAAGCCT 265
Query 241 GCTAATTTATCAACAAATCATTT 263
|||||||||||||||||||||||
Sbjct 266 GCTAATTTATCAACAAATCATTT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12114527509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5