BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935970
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 721 0.0
AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:5923... 701 0.0
AT2G02310.1 | Symbols: AtPP2-B6, PP2-B6 | phloem protein 2-B6 |... 331 7e-90
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 721 bits (390), Expect = 0.0
Identities = 682/820 (83%), Gaps = 32/820 (4%)
Strand=Plus/Plus
Query 58 GCGGAGGAGGGATCGATGTTCCCAGG-CCGTCACCATTCGATTACTTGCCAGAGGATTGC 116
||||||||| ||| || | || || ||||||| |||||| |||| || |||||||||
Sbjct 134 GCGGAGGAGCTATC-AT-CT-CC-GGACCGTCACTGTTCGATAACTTACCGGAGGATTGC 189
Query 117 ATCTCCAACATAATCTCTTTTACAACTCCACGAGACGCGTGTGTTGCAGCTTCTGTTTCG 176
||||||||||| |||||||| || | ||| || ||||| || ||||||||||| ||||||
Sbjct 190 ATCTCCAACATCATCTCTTTCACGAGTCCTCGTGACGCTTGCGTTGCAGCTTCGGTTTCG 249
Query 177 AAAACCTTTGAATCGGCTGTCCAA-TCCGATACCGTATGGGAGAAGTTTCTTCCGCCGGA 235
|||||||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||
Sbjct 250 AAAACCTTTGAATCGGCTGT-TAATTCCGATAGCGTATGGGACAAGTTTCTTCCATCGGA 308
Query 236 TTATTCCTCTTTGGTTCCTCAATCGCGAGTTTTCTTGTCCAAGAAGGATCTCTATTTCTC 295
|||||| ||| | ||||||| ||| |||||||||| || |||||||| ||||||||| |
Sbjct 309 TTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAAGAAGGAGCTCTATTTCGC 368
Query 296 TCTCTGCCACGAA-CCTCTTCTAATCGAAGACGGCAAAAAGAGCTTCTGGTTAGAGAAA- 353
| | ||| || || ||| ||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 369 TATATGCGAC-AATCCTGTTCTAGTCGAAGATGGCGGAAAGAGCTTCTGGTTAGAGAAAG 427
Query 354 ACGAGTGGGAAAAGGTGTATCATGTTATCTCCAAAGGAA---ATGTGGATCACATGGGTT 410
| || |||||||| |||| ||||||||||||| ||| || ||||||||||||||||||
Sbjct 428 A-GAATGGGAAAAAGTGTTTCATGTTATCTCCGAAGAAATCTATGTGGATCACATGGGTT 486
Query 411 AGTAGTCCTCAGTATTGGCGATGGATTTCAATTTCTGAAGCTAGGTTTGAAGAAGTACCA 470
|||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 487 AGTACTCCTCAGTATTGGCGATGGATTTCGATTCCTGAAGCTAGGTTTGAAGAAGTACCA 546
Query 471 AAGCTTCTCAACGTGTGCTGGTTTGAGGTTCGTGGTAGAATGAGTACTCGTTACCTATCT 530
|||| ||||| ||||| ||||||||||| || || |||||| |||| | ||||||
Sbjct 547 GAGCTGCTCAATGTGTGTTGGTTTGAGGTCCGAGGGGGAATGAATACTAAAGAACTATCT 606
Query 531 CCTGGAACTCATTACTCTGTTTACATTGTGTTCAAGCCAAAAG-ATCAATGTCCCGGA-T 588
|||||||| | |||||| | |||||||||||||||| | |||| || |||| || | |
Sbjct 607 CCTGGAACCCGTTACTCGGCTTACATTGTGTTCAAGAC-AAAGAATGGATGT-CCTAATT 664
Query 589 TGGGGGATTTACCAATAAAAGTTAAAGTCGGATTGGTGGGACAAGAACT-TTTTCAAAGA 647
|||||||| | ||| || ||| || || |||||||||||||||||| | || |||||||
Sbjct 665 TGGGGGATGTGCCAGTAGAAGCTACTGTTGGATTGGTGGGACAAGAA-TCTTCTCAAAGA 723
Query 648 TTCATACGCTTTGTTGGGCCTAT-GGATCAAAGGTGTGGGAGAGAAATGAGCGACGTAAC 706
|||| ||||||||||||| | |||||||||| | | ||||||| ||| || |||||
Sbjct 724 CACATATACTTTGTTGGGCCT-TCGGATCAAAGGAGAGACAGAGAAACGAGAGATGTAAC 782
Query 707 GAGACCAGA-GGAAAGAGAAGATGGATGGATGGAAGCTGAGCTTGGTGAATTTTTCAATG 765
||||||| | ||||| ||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 783 GAGACCA-ACTAAAAGAAAAGATGGTTGGATGGAAGCTGAGCTTGGTCAATTCTTCAATG 841
Query 766 AAAT-AAGTTGTGATGATCATGTTGA-AGTAAGTGTTGTTGAGATTAAGTCTCCTTATTG 823
| | | ||||||||| | |||||| | |||| || ||||||||||| ||||||||||
Sbjct 842 -AGTCAGGTTGTGATG-T--TGTTGACA-CAAGTATTCTTGAGATTAAGACTCCTTATTG 896
Query 824 GAAAAGTGGTTTGATCATTCAAGGAATCGAATTCCG-CCC 862
||| | ||||||||||||||||||||||||||||| |||
Sbjct 897 GAAGCGCGGTTTGATCATTCAAGGAATCGAATTCCGTCCC 936
> AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:592359-593602
REVERSE LENGTH=963
Length=963
Score = 701 bits (379), Expect = 0.0
Identities = 690/837 (82%), Gaps = 34/837 (4%)
Strand=Plus/Plus
Query 58 GCGGAGGAGGGATCGATGTTC-CC-AGGCCGTCACCATTCGAT-TACTTGCCAGAGGATT 114
|||| |||| ||||| | ||| || || ||||||| || ||| | |||||| |||||||
Sbjct 146 GCGGTGGAGAGATCG-T-TTCTCCGGGGACGTCACCTTTTGATGT-CTTGCCGGAGGATT 202
Query 115 GCATCTCCAACATAATCTCTTTTACAACTCCACGAGACGCGTGTGTTGCAGCTTCTGTTT 174
|||||||||||||||||||||| |||| ||||||||| ||||| ||||| || || ||||
Sbjct 203 GCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGTTGCTGCATCGGTTT 262
Query 175 CGAAAACCTTTGAATCGGCTGTCCA-ATCCGATACCGTATGGGAGAAGTTTCTTCCGCCG 233
| |||||||||||||| ||||| | |||||| ||||||||| ||||||||||| |||
Sbjct 263 CCAAAACCTTTGAATCAGCTGT-TAGTTCCGATTGCGTATGGGACAAGTTTCTTCCACCG 321
Query 234 GATTATTCCTCTTTGGTTCCTCAATCGCGAGTTTTCTTG--TCCAAGAAGGATCTCTATT 291
|| ||| ||||||||| ||| ||| |||| ||| ||| || |||||||| || ||||
Sbjct 322 GAGTATGAATCTTTGGTTTCTCGATCTCGAG-TTT-TTGCATCGAAGAAGGAACTTTATT 379
Query 292 TCTCTCTCTGCCACGAA-CCTCTTCTAATCGAAGACGGCAAAAAGAGCTTCTGGTTAGAG 350
|| ||||||||||| || ||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 380 TCGCTCTCTGCCAC-AATCCTGTTCTAATCGAAGATGGCAAAAAGAGCTTTTGGTTAGA- 437
Query 351 AAAA-CGAGTGGGAAAAGGTGTATCATGTTATCTCCAAAGGAAATGTGGATCACATGGGT 409
|||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 438 AAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGGAACTTTGGATCACATGGGG 497
Query 410 TAGTAGTCCTCAGTATTGGCGATGGATTTCAATTTCTGAAGCTAGGTTTGAA-GAAGTAC 468
||||||||| | ||||||| ||||||||||||| ||||| ||| | || || || ||
Sbjct 498 AAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTA-GATTCAACAAAATAG 556
Query 469 CAAAGCTTCTCAACGTGTGCTGGTTTGAGGTTCGTGG-TAGAATGAGTACTCGT-TACCT 526
|| ||||||| | ||||| ||||||||| ||||||| || | || ||||| | ||
Sbjct 557 CAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAG-ACAAGCGCTCGTGT-GCT 614
Query 527 ATCTCCTGGAACTCATTACTCTGTTTACATTGTGTTCAAGCCAAAAGATCAATGTCCCGG 586
|||||||||||||| |||||| | |||||||||||||||| | ||||||| |||||| ||
Sbjct 615 ATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACGAAAGATCGATGTCCTGG 674
Query 587 ATTGGGGGATTTACCAATAAAAGTTAAAGTCGGATTGGTGGGACAAGAACT-TTTTCAAA 645
||| ||| |||| || || ||||| | | || || |||||||||||| | || | |||
Sbjct 675 ATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGGGACAAGAA-TCTTCTAAAA 733
Query 646 GATTCATACGCTTT-GTTGGGCCTATGGATCAAAGGTGTGGGAGAGAAATGAGCGACGTA 704
|||||||| ||| | ||||||| ||||| |||| | |||| |||| ||| || |||
Sbjct 734 GATTCATA-TATTTCATAGGGCCTAGGGATCGAAGGGGAAGGAGGGAAACGAGAGATGTA 792
Query 705 ACGAGACCAGAGGAAAGAGAAGATGGATGGATGGAAGCTGAGCTTGGTGAATTTTTCAAT 764
|| | |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 793 ACAAAACCAGATCAAAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTTCAAT 852
Query 765 GAA-ATAAGTTGTGATGATCATGTTGAAG-TAAGTGTTGTTGAGATTAAGTCTCCTTATT 822
||| | ||| |||||||| | ||| || | |||||| ||||||||||||| |||| ||
Sbjct 853 GAAGA-AAGGTGTGATGA--A-ATTG-AGTTTAGTGTTATTGAGATTAAGTCCCCTTCTT 907
Query 823 GGAAAAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAGACGCCCGTAA 879
|||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 908 GGAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAA-GCCAGTAA 963
> AT2G02310.1 | Symbols: AtPP2-B6, PP2-B6 | phloem protein 2-B6
| chr2:608759-610130 REVERSE LENGTH=924
Length=924
Score = 331 bits (179), Expect = 7e-90
Identities = 637/850 (75%), Gaps = 63/850 (7%)
Strand=Plus/Plus
Query 43 AATCTAGCAGCGGATGCGGAGGAGGGATCGATGTTCCCAGG-CCGTCACCATTCGATTAC 101
|||||| | | ||| |||| |||| |||| || ||| || | || || || ||| ||
Sbjct 86 AATCTATCGGTGGAGGCGGGGGAGAGATC---GTACCC-GGTCATTCGCCGTTTGATGAC 141
Query 102 TTGCCAGAGGATTGCATCTCCAACATAATCTCTTTTACAACTCCACGAGACGCGTGTGT- 160
||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 142 TTGCCGGAGGATTGCATCTCCAACATAATCTCTTTTACAAGTCCACGGGACGTGTGTGTC 201
Query 161 TGCAGCTTCTGTTTCGAAAA-CCTTTG-A-ATCGGCTGTCCAATCCGATACCGTATGGGA 217
| | ||||| ||||| |||| |||| | | || | | ||||| | |||| |||||||
Sbjct 202 TCC-GCTTCAGTTTC-AAAATCCTTCGCACAT-G-CGGTCCAGTGTGATAGTATATGGGA 257
Query 218 GAAGTTTCTTCCGCCGGATTATTCCTCTTTGGTTCCTCAATCGCGAGTTTTCTTGTCCAA 277
||||||||||||| |||| ||| || || |||||| | ||||||||||| || ||
Sbjct 258 GAAGTTTCTTCCGTCGGAGTATGAATCCCTGATTCCTCCGTGGCGAGTTTTCTCATCGAA 317
Query 278 GAAGGATCTCTATTTCTCTCTCTGCCACGAACCTCTTCTAATCGAAGACGGCAAAAAGAG 337
|||||| ||||||||| |||| ||| |||| ||| ||||| | || || |||||||||||
Sbjct 318 GAAGGACCTCTATTTCACTCTTTGCTACGATCCTGTTCTAGTTGAGGATGGCAAAAAGAG 377
Query 338 CTTCTGGTTAGAGAAAACGAGTGGGAAAA-G-GTGTATCATGTTATCTCCAAAGGAAATG 395
||| |||||||||| | |||||||||| | ||||| | ||||| || |||||||| ||
Sbjct 378 CTTTTGGTTAGAGACGGCAAGTGGGAAAAAGTGTGTA-C-TGTTAGCTGCAAAGGAACTG 435
Query 396 TGGATCACATG-GGTTAGTAGTCCTCAGTATTGGCGATGGATTTCAA-TTTCTGAAGCTA 453
||||||||| | || | || |||| ||||||||| ||||||| || ||| |||| |||
Sbjct 436 TGGATCACAGGAGGGAA-TAATCCTGAGTATTGGCAATGGATTG-AACTTTGTGAATCTA 493
Query 454 GGTTTGAAGAAG-TACCAAAGCTTCTCAACG-T-GTGCTGGTTTGAGGTTCGTGGTAGAA 510
| |||||| ||| ||||| |||||||||| | || || || || | ||||||| |
Sbjct 494 GTTTTGAA-AAGGTACCAGAGCTTCTCAATAATCGTTCT--TTCCAGATGGGTGGTAGTA 550
Query 511 TGAGTACTCGTTACCT-ATCTCCT-GGAACTCATTACTCTGTTTACATTGTGTTCAAGCC 568
||||||| | | || ||| ||| ||||||||||| || ||||||||||||| ||||
Sbjct 551 TGAGTACCCAA-ATCTTATC-CCTAGGAACTCATTATTCAGTTTACATTGTGTACAAGAT 608
Query 569 AAAAGATCAATGTCCCGGATTGGGGGATTTACCAATAAAAGTTAAAGTCGGATTGGTGGG 628
||||||| || ||| || || | ||||| || ||| ||||| || ||||| ||
Sbjct 609 AAAAGATGAACGTCATGGCTTACGAGATTTGCCTATACAAGTTGGTGTAGGATTTAAAGG 668
Query 629 ACAAGAACTTTTTCAAAGA-TTCATACGCTTTGTTGGGCCTATGGAT----C-AAAGGTG 682
|||||| | | ||| | |||||| |||||| | | ||| ||| | |||| |
Sbjct 669 CCAAGAAATGCCT-AAACAATTCATATGCTTTGACGAGTCTACCGATAAAACCAAAGA-G 726
Query 683 TGGG-AGAGAAATGAGCGACGTAACGAGACCAGAGGAA-AGAGAAGATGGATGGATGGAA 740
||| | |||| || | | ||| || | || || || || | |||||| ||||||||
Sbjct 727 TGGCCAAAGAA--GAA-G-C-TAATGAAATCAAAG-AAGAGGGGAGATGGGTGGATGGAG 780
Query 741 GCTGAGCTTGGTGAATTT-TTCAATGA---A--AT-AA-G--TTGTGATGATCATGTTGA 790
|| ||| |||| || ||| |||||||| | || || | || |||||| | |||||
Sbjct 781 GCAGAGATTGGGGA-TTTCTTCAATGATGGAGGATTAATGGGTTTTGATGA--A-GTTGA 836
Query 791 AGTAAGTGTTGTTGA-GATTAAGTCTCCTTATTGGAAAAGTGGTTTGATCATTCAAGGAA 849
||| ||| |||| || | ||| || ||| ||| ||| ||||| |||| ||| ||||||
Sbjct 837 AGTGAGTATTGTAGACG-TTACTTCACCTAATTTGAAGTGTGGTGTGATGATTGAAGGAA 895
Query 850 TCGAATTCCG 859
| ||||||||
Sbjct 896 TTGAATTCCG 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5