BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935972
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B1... 472 2e-132
> AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10
| chr2:619406-620768 REVERSE LENGTH=1144
Length=1144
Score = 472 bits (255), Expect = 2e-132
Identities = 450/539 (83%), Gaps = 33/539 (6%)
Strand=Plus/Plus
Query 2 GAGTGGGAAGAGGTGTATCATGTTATCAGCGATGAACTTCTCAATCGCATGGGGAGATGA 61
|||||||||||||||| | |||||||| ||||||||| |||||||| |||||||||| |
Sbjct 335 GAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAATCATATGGGGAGATAA 394
Query 62 TCCTC-GCTATTGGCAATGGATTTCAATCCCTGAATCTAGGTTTGAAAAAGTTGCGGAGC 120
||||| | ||||||||||||||| |||| ||||||||||||||||||||||| ||| | |
Sbjct 395 TCCTCAG-TATTGGCAATGGATTCCAATTCCTGAATCTAGGTTTGAAAAAGTAGCGAAAC 453
Query 121 TTCTCCAGGTTTGTTGGTTCGATG-TTCGTGGCAAG-ACAAATACTCGAGTCCTATCTCC 178
||| | | || ||||||||||| | |||||||| || || |||||||| || |||||||
Sbjct 454 TTCGCGATGTATGTTGGTTCGA-GATTCGTGGC-AGAACGAATACTCGTGTATTATCTCC 511
Query 179 AAAAACTCATTACTCGGCTTACATTGTGTTCAAGAGAGCGGATCAATGTTATGGCTTTAA 238
|| ||||| |||||||||||| |||||||||||| ||| |||| |||||||||||||| |
Sbjct 512 AAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGTGGATAAATGTTATGGCTTTCA 571
Query 239 GGATGAGGCCATAGAAGCTGTAGTTGGAATGGTGGGACAAGAAG-CTTCTAGAAGA-TAT 296
| ||| |||||||||||||| || ||| ||||||||| || || ||||||||||| ||
Sbjct 572 GAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGAC-AGGAGCCTTCTAGAAGATTA- 629
Query 297 ATATGCTTTGA-TGAGGCTATAGATGGGGAGTTTCAAAGGGGAGAGAGAGGAATGAGGCC 355
||||||||| | ||| |||||| | | | |||||| || |||| | |
Sbjct 630 ATATGCTTT-AGTGAAGCTATA-A----G-G------AGGGGA-AG-GAGG-A--A---- 667
Query 356 CCTAGTGAAACCCGAGGAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAATTCTT 415
| | |||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 668 CGTTGTGAAACCTAAGCAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTT 727
Query 416 CATTGAAGGAGGAATAATGAACAGTGAGGAAATTGAGATGGGTGCTTTAGAGACTAAGCG 475
|| ||| |||||||||||| | | ||| |||||||||||| ||||||||||||||||||
Sbjct 728 CAATGATGGAGGAATAATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCA 787
Query 476 GCTCAATGGGAAGTATGGCTTGATTATCCAAGGAATTGGAATCCGTCCTGCGAAAATCC 534
||||||| |||||| ||||||||| || |||||||||| |||||| ||||| |||||||
Sbjct 788 GCTCAATCGGAAGTGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAATCC 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26875268645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5