BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935977
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B1... 427 8e-119
AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:5923... 309 3e-83
AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partn... 309 3e-83
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 263 2e-69
AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8 |... 261 8e-69
AT2G02320.1 | Symbols: AtPP2-B7, PP2-B7 | phloem protein 2-B7 |... 246 2e-64
> AT2G02360.1 | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10
| chr2:619406-620768 REVERSE LENGTH=1144
Length=1144
Score = 427 bits (231), Expect = 8e-119
Identities = 332/382 (87%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 75 ATCGGATTCTTCGCCGTTTGATTCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTT 134
|||||| || || ||||| ||||| || || ||||| |||||| || |||||||||||||
Sbjct 56 ATCGGAGTCGTCTCCGTTCGATTCATTTCCGGAAGATTGCATCTCCTACATAATCTCTTT 115
Query 135 CACAAGTCCACGCGACGCGTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGC 194
|||| ||||||||| ||||||||||||||| || |||||||||| ||||||||| |||
Sbjct 116 TACAAATCCACGCGATGCGTGCGTCGCTGCTACGGTTTCGAAAACGTTTGAATCGACGGT 175
Query 195 CAAATCAGAT-TTCGTATGGGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCTC 253
|| |||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 176 GAAGTCAGATATT-ATATGGGAGAAGTTTCTTCCGGCGGATTATGAATCTCTGATTCCTC 234
Query 254 GATCGCGGGAATTCTCATCGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTC 313
|||||| | ||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 235 CATCGCGAGTTTTCTCATCGAAGAAGGAGCTCTATTTCTCTCTCTGTAACGATCCTGTTC 294
Query 314 TAATCGATGATGGCAAAAAGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCA 373
|| |||| |||| |||||||||| | |||||||||||||||||||||||||| ||| | |
Sbjct 295 TATTCGACGATGACAAAAAGAGCGTATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGA 354
Query 374 TGTTATCAGCTATGAATCTCTCAATGGTATGGGGAGAGGATCGTCACTATTGGCAATGGA 433
||||||| || ||||| |||||||| |||||||||| ||| ||| |||||||||||||
Sbjct 355 TGTTATCTGCGATGAACCTCTCAATCATATGGGGAGATAATCCTCAGTATTGGCAATGGA 414
Query 434 TTCCAATTCCTGAATCTAGGTT 455
||||||||||||||||||||||
Sbjct 415 TTCCAATTCCTGAATCTAGGTT 436
Score = 346 bits (187), Expect = 2e-94
Identities = 356/431 (83%), Gaps = 37/431 (9%)
Strand=Plus/Plus
Query 452 GGTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTCGG 511
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 469 GGTTCGAGATTCGTGGCAGAACGAATACTCGTGTATTATCTCCAAGAACTCGTTACTCGG 528
Query 512 TC-TACATTGTGTTC--GTGGAATCGGATCAATGTTATGGCTTTGC-GGATGTGG-CAGT 566
| || ||||||||| | ||| | |||| |||||||||||||| | | |||||| || |
Sbjct 529 -CTTATATTGTGTTCAAG-GGAGT-GGATAAATGTTATGGCTTT-CAGAATGTGGCCA-T 583
Query 567 AGAAGCTGAAGTTGGAATGGTGGGACATGAACCTTCTAGAAGATTCATATGTTTTGATAA 626
|||||||| || ||| |||||||||| || |||||||||||||| ||||| || |
Sbjct 584 AGAAGCTGCGGTAGGAGTGGTGGGACAGGAGCCTTCTAGAAGATTAATATG-CTT--T-- 638
Query 627 AGCTATGAATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGTGAAACCAAA 686
|| |||| || ||| | || || || ||||||||| ||||||||||||| ||
Sbjct 639 AG---TGAA---GC----TAT-A--AG-GA-GG-GGAAGGAGGAACGTTGTGAAACCTAA 682
Query 687 GGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATGAAGGAGGATT 746
| ||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||| |
Sbjct 683 GCAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAAT 742
Query 747 GATGAATAGTGATGAAATTGAGATGAGTGCCTTAGAGAATAAGC-GTATCACTTGGAGGG 805
||| ||| ||||||||||||||||||||| ||||||| ||||| | ||| | ||| |
Sbjct 743 AATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCAG-CTCAATCGGAAGT 801
Query 806 GTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAAGTCCTTTAAAGTAATAAT 865
||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||
Sbjct 802 GTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAA-TCCTCTGAAGTAAT--- 857
Query 866 GCGGCGAAACA 876
|||||| ||||
Sbjct 858 GCGGCGGAACA 868
> AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:592359-593602
REVERSE LENGTH=963
Length=963
Score = 309 bits (167), Expect = 3e-83
Identities = 301/366 (82%), Gaps = 8/366 (2%)
Strand=Plus/Plus
Query 91 TTTGAT-TCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACGCGA 149
|||||| | |||||| || || |||||| |||||||||||||||||||||||||||| ||
Sbjct 181 TTTGATGT-CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGA 239
Query 150 CGCGTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGT 209
|||||||| ||||| ||| |||| |||||||||||||| || | | || |||| |||
Sbjct 240 TGCGTGCGTTGCTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGT 299
Query 210 ATGGGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCTCGATCGCGGGAATTCT- 268
|||||| |||||| |||| ||||| ||||||||| ||||| ||||||| || | || |
Sbjct 300 ATGGGACAAGTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCTCGAGTTTT-TG 358
Query 269 CATCGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCA 328
||||||||||||| || ||||||||||| || || ||||| |||||||||| |||||||
Sbjct 359 CATCGAAGAAGGAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGAAGATGGCA 418
Query 329 AAAAGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCATGTTATCAGCTATG- 387
|||||||| | |||||||| ||||||||||| || || |||||||||||||| | | |
Sbjct 419 AAAAGAGCTTTTGGTTAGAAAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGG 478
Query 388 AATCTCTCAATGGTATGGGGAGAGGA-TCGTCACTATTGGCAATGGATTCCAATTCCTGA 446
|| || | || ||||||| || | || | | ||||||||||||||| ||||||||||
Sbjct 479 AA-CTTTGGATCACATGGGGA-AGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGA 536
Query 447 ATCTAG 452
||||||
Sbjct 537 ATCTAG 542
> AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partner
3 | chr2:617800-619091 REVERSE LENGTH=1030
Length=1030
Score = 309 bits (167), Expect = 3e-83
Identities = 249/289 (86%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 94 GATTCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACG-CGACGC 152
||||| ||||| || | |||||| | ||||||||||||||||||||||| | |||||
Sbjct 46 GATTCGTTGCCTGAGGGATGCATTTCAAACATAATCTCTTTCACAAGTCC-TGAAGACGC 104
Query 153 GTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGTATG 212
|||||||||||| || ||||||| | ||| |||||||||| ||||||||| |||||||
Sbjct 105 TTGCGTCGCTGCTGCGGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATG 164
Query 213 GGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCT-CGATCGCGGGAATTCTCAT 271
|||||||||| ||||| ||||||| ||||||||| || || || ||||| | |||||||
Sbjct 165 GGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCAT 223
Query 272 CGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCAAAA 331
|||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||||
Sbjct 224 CGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAA 283
Query 332 AGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCATGTTATC 380
|||| | ||||||||||||||||||||||||||||| || ||||||||
Sbjct 284 TGAGCTTATGGTTAGAGAAAGCGAGTGGGAAGAGATGCATAATGTTATC 332
Score = 222 bits (120), Expect = 4e-57
Identities = 320/412 (78%), Gaps = 31/412 (8%)
Strand=Plus/Plus
Query 450 TAGGTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTC 509
|||||| ||| || | |||||| ||||||| ||||||| |||| |||||||||||||||
Sbjct 441 TAGGTTTGAGTTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAGAACTCGTTACTC 500
Query 510 GGTCTACATTGTGTTCGTGGAATCGGATCAAT-GTTATGGCTTTGCGGATGTGGC-AGTA 567
|||||||||||||||| | || ||||| ||| | | ||||||| || |||| | | ||
Sbjct 501 GGTCTACATTGTGTTCAAGAAAGCGGAT-AATTGGTGTGGCTTTAAGGGTGTGTCTA-TA 558
Query 568 GAAGCTGAAGTTGGAATGGTGGGACATGAACCTTCTAGAAGATTCATATGTTTTGATAAA 627
|| |||| |||||| || |||||| | || ||| |||||| |||||||| |||||||
Sbjct 559 GAGGCTGTAGTTGGGATAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGATAC- 617
Query 628 GCTATG--AATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGTGAAACCAA 685
|| ||| || |||||| | ||| ||| || || || | || | |||||||
Sbjct 618 GC-ATGGGAAGGGGCAGGCT----CGAAAGA-GG---AA--AGTG--GTGGCGAAACCAG 664
Query 686 AGGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATGAAGGAGGAT 745
|| ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 665 AGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTATAATGAAGGAGGAT 724
Query 746 TGATGAATAGTGATGAAATTGAGATGAGTGCCT-TAGAG---AA-TAAGCGTATCACTTG 800
| |||| ||||||||| ||||||| ||| | | ||||| || || || | || |
Sbjct 725 TAATGAGTAGTGATGAGGTTGAGATAAGTAC-TGTAGAGGGTAAATACGCCCAGCA---G 780
Query 801 GAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAAGTCCT 852
|| | ||| ||| |||||| ||||||||||||||| |||||||||| ||||
Sbjct 781 AAGCG-TGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAA-TCCT 830
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 263 bits (142), Expect = 2e-69
Identities = 292/364 (80%), Gaps = 11/364 (3%)
Strand=Plus/Plus
Query 99 CTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACGCGACGCGTGCGT 158
||| || || || |||||| ||||||| ||||||||||| ||||| || ||||| |||||
Sbjct 174 CTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGTGACGCTTGCGT 233
Query 159 CGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGTATGGGAGAA 218
|| |||||| |||||||||||||||||||||| | || || ||| ||||||||| ||
Sbjct 234 TGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGACAA 293
Query 219 GTTTATTCCGCCGGATTATGAATCTCTGGTTCCTCGATCGCGGGAATTCTCATCGAAGAA 278
|||| |||| |||||||| |||||| ||||||| ||| || | ||||||||||||||
Sbjct 294 GTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAAGAA 353
Query 279 GGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCAAAAAGAGCAT 338
|||||||||||||||| |||| || ||||| ||||| |||| |||||| ||||||| |
Sbjct 354 GGAGCTCTATTTCGCTATATGCGACAATCCTGTTCTAGTCGAAGATGGCGGAAAGAGCTT 413
Query 339 CTGGTTAGAGAAAGCGAGTGGGAAGA-GATGTATCATGTTATCAGCTATGAA-TCTCTCA 396
|||||||||||||| || |||||| | | ||| |||||||||| | | ||| ||| |
Sbjct 414 CTGGTTAGAGAAAGAGAATGGGAAAAAG-TGTTTCATGTTATCTCCGAAGAAATCTATG- 471
Query 397 ATGG-T-A--TGGGGAGAGGA-TCGTCACTATTGGCAATGGATTCCAATTCCTGAATCTA 451
||| | | |||| || | || ||| ||||||| ||||||| | ||||||||| |||
Sbjct 472 -TGGATCACATGGGTT-AGTACTCCTCAGTATTGGCGATGGATTTCGATTCCTGAAGCTA 529
Query 452 GGTT 455
||||
Sbjct 530 GGTT 533
> AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8
| chr2:616088-617274 REVERSE LENGTH=918
Length=918
Score = 261 bits (141), Expect = 8e-69
Identities = 328/413 (79%), Gaps = 34/413 (8%)
Strand=Plus/Plus
Query 453 GTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTCGGT 512
||| |||||||||||||||| |||| | |||| ||||||||| ||||||||||||||
Sbjct 510 GTTTGAGATTCGTGGCAGAATAAATAGTCGTGTGATATCTCCAAAAACTCGTTACTCGG- 568
Query 513 C-TACATTGTGTTCGTGGAATCGGATCA-ATGTTATGGCTTTGCGGATGTGGCAGTAGAA 570
| |||||||||| | | ||| | || | |||||||||||||| | |||| || ||||||
Sbjct 569 CTTACATTGTGTACAAGAAATTGAAT-ATATGTTATGGCTTTGAGAATGTAGCCGTAGAA 627
Query 571 GCTGAAGTTGGAATGGT-GGG-A-CA--T----GAACCTTCTAGAAGAT-TCATATGTTT 620
| || ||||||| |||| ||| | | | ||| ||| | |||||| | ||||| ||
Sbjct 628 GTTGTAGTTGGAGTGGTGGGGCAGGATTTAGAAGAATCTTGTCGAAGATAT-ATATGCTT 686
Query 621 TGATAAAG-CTATGAATGGGCAGTTTATAACGAGAGA-CGGTGGAAGGAGGGACGTTGTG 678
|||| || ||||| ||| ||||||| || |||||| || |||| | | || | ||
Sbjct 687 TGAT-GAGACTATGGATGAGCAGTTTCGAAGGAGAGATAGG-GGAA--A-GAACCTAGTA 741
Query 679 AAACCA-A-AGGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATG 736
|||||| | |||||| | |||||||||||||||||||| || |||||||||||| |||||
Sbjct 742 AAACCAGAGAGGAGA-A-AAGATGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATG 799
Query 737 AAGGAGGATTGA-TGAATAG-TGATGAAATTGAGATGAG-TGCCTTAGAGAATAAGC-GT 792
|||||||||| | |||| | |||||||||||||||| | ||| |||||| ||||| |
Sbjct 800 AAGGAGGATT-ATTGAA-CGATGATGAAATTGAGATG-GTTGCTTTAGAGGCTAAGCAGC 856
Query 793 ATCACTTGGAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAA 845
||| ||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 857 GTCA-TTGGAAACGTGGCTTGATCATTCAAGGAATTGAAATCCGTCCTACGAA 908
> AT2G02320.1 | Symbols: AtPP2-B7, PP2-B7 | phloem protein 2-B7
| chr2:610428-611843 REVERSE LENGTH=1079
Length=1079
Score = 246 bits (133), Expect = 2e-64
Identities = 329/416 (79%), Gaps = 43/416 (10%)
Strand=Plus/Plus
Query 452 GGTTAGAGATTCG-TGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTCG 510
|||| |||||||| | |||||||||||||| || | ||||| ||||||||||||||||||
Sbjct 532 GGTTCGAGATTCGAT-GCAGAACGAATACTCGTTTTCTATCACCAAGAACTCGTTACTCG 590
Query 511 GTCTACATTGTGTTCGTGGAATCGGATCA-ATGTTATGGCTTTGCGGATGTGG-CAGTAG 568
|| |||||||||||| || || ||||| | |||||||||||||||| |||||| || | |
Sbjct 591 GTTTACATTGTGTTCTTGAAAGCGGAT-ATATGTTATGGCTTTGCGTATGTGGCCA-TGG 648
Query 569 AAGCTGAAGTTGGAATGGTGGGAC--------A-TGAACCTTCTAGAAGAT-TCATATGT 618
|||||| |||| |||||||||||| | |||| ||| |||||||| | ||||
Sbjct 649 AAGCTGTAGTTAGAATGGTGGGACATGAATTAAGTGAATCTTGTAGAAGATAT-GTATGC 707
Query 619 TTTGATAAAGCTAT-GAATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGT 677
||| || | ||||| || | |||||||| | || | | |||| || || | ||
Sbjct 708 TTTCATGAGGCTATGGAGT-GGCAGTTTCTTAC---A-A----GGAA-GA---ACCTAGT 754
Query 678 GAAACCAAAGGA-GAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATG 736
||| || | || |||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 755 GAATCCCGA-GAGGAGAGAAGATGGGTGGATGGAGATAGAGATTGGGGAATTCTTTAATG 813
Query 737 AAGGAGGATTGATGAATAGTGATGAAATTGAGATGAGTGCCTT-AGAGAATA---AGCGT 792
|||||| ||| | ||||| |||||||||||||||||||| || ||||| || ||||
Sbjct 814 AAGGAGCATTTAGGAATAATGATGAAATTGAGATGAGTGT-TTCAGAGACTACTCAGCGC 872
Query 793 A-TCACTTGGAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAA 847
| | || | | | ||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 873 AAT-AC--GAAACG-TGGCTTGATTATTCAAGGAATTGAAATCCGTCCTACGAAAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5