BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935980
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02380.1 | Symbols: ATGSTZ2, GSTZ2 | glutathione S-transfera... 1042 0.0
AT2G02390.3 | Symbols: ATGSTZ1, GST18, GSTZ1 | glutathione S-tr... 712 0.0
> AT2G02380.1 | Symbols: ATGSTZ2, GSTZ2 | glutathione S-transferase
(class zeta) 2 | chr2:626842-628676 FORWARD LENGTH=815
Length=815
Score = 1042 bits (564), Expect = 0.0
Identities = 636/671 (95%), Gaps = 3/671 (0%)
Strand=Plus/Plus
Query 19 TCATGGGGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGCGTCCGTA 78
||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 TCA-GGCGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCATGTGCTCATCGCGTCCGTA 118
Query 79 TCGCCCTCACTTTAAAAGGACTTGATTATGAATATATACCAGTGATTTTGCTCAAAGGGG 138
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 119 TCGCCCTCACTTTAAAAGGGCTTGATTATGAATATATACCGGTTAATTTGCTCAAAGGGG 178
Query 139 ATCAATTCGATCCAGATTTCAAGCAGATCAATCCAATGGGCACTGTACCAGCGCTTGTTG 198
|||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCAATCCGATTCAGATTTCAAGAAGATCAATCCAATGGGCACTGTACCAGCGCTTGTTG 238
Query 199 ATGGTGATGTTGTGATTAATGATTCTTTCGCAATAATAATGTATCTGGATGATAAGTATC 258
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 239 ATGGTGATGTTGTGATTAATGACTCTTTCGCAATAATAATGTACCTGGATGATAAGTATC 298
Query 259 CTGAGCCACCGCTGTTACCAAGTGACCT-CCATAAACGAGCGGTAAATTACCAGGCGACG 317
| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 299 CGGAGCCACCGCTGTTACCAAGTGAC-TACCATAAACGGGCGGTAAATTACCAGGCGACG 357
Query 318 AGTATTGTCATGTGTGGTATACAACCTCATCAAAATATGGCACTTTTTAGGTATCTCGAG 377
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 358 AGTATTGTCATGTCTGGTATACAGCCTCATCAAAATATGGCTCTTTTTAGGTATCTCGAG 417
Query 378 GAAAAGATAAATGCCGAGGAGAAAACTGCTTGGATTACCAACGCTATCACAAAAGGATTC 437
|| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 418 GACAAGATAAATGCTGAGGAGAAAACTGCTTGGATTACTAATGCTATCACAAAAGGATTC 477
Query 438 ACAGCTCTCGAGAATCTGTTGGTGAGTTGCGCTGGAAAATACGCGACTGGTGATGAAGTT 497
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACAGCTCTCGAGAAACTGTTGGTGAGTTGCGCTGGAAAATACGCGACTGGTGATGAAGTT 537
Query 498 TACTTGGCCGATCTTTTTCTAGCACCACAGATCCACGCAGCATTCAACAGATTCCAGATT 557
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 TACTTGGCTGATCTTTTCCTAGCACCACAGATCCACGCAGCATTCAACAGATTCCATATT 597
Query 558 AACATGGAACCATACCCGACTCTTGCAAAGTTTCACGAGTCATACAACGAACTGCCTGCA 617
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 598 AACATGGAACCATTCCCGACTCTTGCAAGGTTTTACGAGTCATACAACGAACTGCCTGCA 657
Query 618 TTTCAAAATGCAGTCCCAGAGAACCAGCCAGATACTCCTTCGACCATCTGATTCTGCGAA 677
||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 658 TTTCAAAATGCAGTCCCGGAGAAGCAACCAGATACTCCTTCCACCATCTGATTCTGTGAA 717
Query 678 CCGTAAGCTTC 688
|||||||||||
Sbjct 718 CCGTAAGCTTC 728
> AT2G02390.3 | Symbols: ATGSTZ1, GST18, GSTZ1 | glutathione S-transferase
zeta 1 | chr2:628899-631114 FORWARD LENGTH=962
Length=962
Score = 712 bits (385), Expect = 0.0
Identities = 592/688 (86%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 26 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGCGTCCGTATCGCCCT 85
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 137 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGTGTCCGTATCGCCCT 196
Query 86 CACTTTAAAAGGACTTGATTATGAATATATACCAGTGATTTTGCTCAAAGGG-G----A- 139
| |||| ||||| ||||||||||| ||||||||||||| ||||||| ||||| | |
Sbjct 197 CGCTTTGAAAGGGCTTGATTATGAGTATATACCAGTGAATTTGCTC-AAGGGTGATCAAT 255
Query 140 TC-A---A---T-TC-----GATC--C-AGATTTCAAGCAGATCAATCCAATGGGCACTG 183
|| | | | || |||| | |||||||||| |||||||||||||||| ||||
Sbjct 256 TCGATTCAGTTTATCGTTTTGATCTTCAAGATTTCAAGAAGATCAATCCAATGGGAACTG 315
Query 184 TACCAGCGCTTGTTGATGGTGATGTTGTGATTAATGATTCTTTCGCAATAATAATGTATC 243
||||||| || || ||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 316 TACCAGCTCTGGTGGATGGAGATGTTGTGATTAATGATTCTTTTGCGATAATAATGTATC 375
Query 244 TGGATGATAAGTATCCTGAGCCACCGCTGTTACCAAGTGACCTCCATAAACGAGCGGTAA 303
||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||| || |
Sbjct 376 TGGATGAGAAGTACCCTGAGCCACCTTTGTTACCTCGTGACCTCCATAAACGAGCTGTGA 435
Query 304 ATTACCAGGCGACGAGTATTGTCATGTGTGGTATACAACCTCATCAAAATATGGCACTTT 363
|||||||||| | |||||||||| ||| ||| ||||| |||||||||||| |||| ||
Sbjct 436 ATTACCAGGCAATGAGTATTGTCTTGTCTGGCATACAGCCTCATCAAAATCTGGCTGTTA 495
Query 364 TTAGGTATCTCGAGGAAAAGATAAATGCCGAGGAGAAAACTGCTTGGATTACCAACGCTA 423
|||||||| |||||||||||||||||| |||||||| ||||| ||| ||| || ||||
Sbjct 496 TTAGGTATATCGAGGAAAAGATAAATGTGGAGGAGAAGACTGCCTGGGTTAATAATGCTA 555
Query 424 TCACAAAAGGATTCACAGCTCTCGAGAATCTGTTGGTGAGTTGCGCTGGAAAATACGCGA 483
||||||||||||| |||||||||||||| |||||||||| ||||||||| ||| | ||||
Sbjct 556 TCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAATTGCGCTGGGAAACATGCGA 615
Query 484 CTGGTGATGAAGTTTACTTGGCCGATCTTTTTCTAGCACCACAGATCCACGCAGCATTCA 543
||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||| |||
Sbjct 616 CTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCACAGATCCACGGAGCAATCA 675
Query 544 ACAGATTCCAGATTAACATGGAACCATACCCGACTCTTGCAAAGT-TTCACGAGTCATAC 602
||||||||||||||||||||||||| ||||| ||||||||||| | || |||| ||||||
Sbjct 676 ACAGATTCCAGATTAACATGGAACCGTACCCAACTCTTGCAAAATGTT-ACGAATCATAC 734
Query 603 AACGAACTGCCTGCATTTCAAAATGCAGTCCCAGAGAACCAGCCAGATACTCCTTCG--- 659
|||||||||||||| |||||||||||| | || || || ||||||||| |||||||
Sbjct 735 AACGAACTGCCTGCGTTTCAAAATGCACTACCGGAAAAGCAGCCAGATGCTCCTTCTTCC 794
Query 660 ACCATCTGATTCTGCGAACCG-TAAGCT 686
|||||||||||||| ||||| ||||||
Sbjct 795 ACCATCTGATTCTGTGAACCCATAAGCT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5