BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935985
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class... 569 2e-161
AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic | c... 448 8e-125
> AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class
Ic | chr4:13307977-13313109 REVERSE LENGTH=2352
Length=2352
Score = 569 bits (308), Expect = 2e-161
Identities = 390/427 (91%), Gaps = 15/427 (4%)
Strand=Plus/Plus
Query 418 AGTTGATTTTTCCTCTCCCAACATTGCAAAATAAATACATGTTGGTCATCTTAAGATCAA 477
||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 552 AGTTGATTTTTCCTCTCCCAACATTGCAAAAGAAATGCATGTTGGTCATC-TAAGATCAA 610
Query 478 CTATCATCGGTGACA-TGCTAGCTCGCATGCTCGAGTACTCAAAGGTTGAAGTTCTACGC 536
||||||| ||||||| | |||||||||||||||||||||||| | |||||||||||||||
Sbjct 611 CTATCATTGGTGACACT-CTAGCTCGCATGCTCGAGTACTCACATGTTGAAGTTCTACGC 669
Query 537 AGAAACCATGTTGATGATTGGGGAACAAAGTTTGGCATGCTAATTGAGTACCTCTTTGAG 596
||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 670 AGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATGCTAATTGAGTACCTCTTTGAG 729
Query 597 AAATTTCCTGATACAGATAGTGTGATCGAGACAG-A-T-GTCGTTTTTGATAGGTGTTTT 653
||||||||||||||||||||||||| |||||||| | | | | | || | ||||||||
Sbjct 730 AAATTTCCTGATACAGATAGTGTGACCGAGACAGCAATTGGAGATCTTCA--GGTGTTTT 787
Query 654 ACAAGGCATCaaaaaaaGAAATTTGATCTGGATGAGGACTTTAAGGAAAGAGCACAACAA 713
|||||||||||||| | |||||||||||||| |||| ||||||||||| |||||||||
Sbjct 788 ACAAGGCATCAAAACAT-AAATTTGATCTGGACGAGGCCTTTAAGGAAAAAGCACAACAG 846
Query 714 GCTGTGGTCCGTCTACAGGCGCAGGGTGGTGATCCTGTTTACCGTAAGGCTTGGGCTAAG 773
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 847 GCTGTGGTCCGTCTACAGG-G-----TGGTGATCCTGTTTACCGTAAGGCTTGGGCTAAG 900
Query 774 ATCTGTGAAATCAGCCGAACTGAGTTTGCCAAGGTTTATCAACGCCTTCGAGTTGAGCTT 833
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 ATCTGTGACATCAGCCGAACTGAGTTTGCCAAGGTTTACCAACGCCTTCGAGTTGAGCTT 960
Query 834 GAAGAAA 840
|||||||
Sbjct 961 GAAGAAA 967
Score = 505 bits (273), Expect = 5e-142
Identities = 304/319 (95%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 102 AATGAAGAATTTACGGGAAATCTAAAACGCCAACTCGCGAAGCTCTTGGTTGTGTGTCTA 161
||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| | ||||
Sbjct 166 AATGAAGAATTTACGGGAAATCTGAAACGTCAACTCGCGAAGCTCTTTGATGTTTCTCTA 225
Query 162 AAATTAACGGTTCCTGATGAACCTAGTTTTGAGCCCTTGGTGGCTGCCTCCGCTGC-TGG 220
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 226 AAATTAACGGTTCCTGATGAACCTAGTGTTGAGCCCTTGGTGGCTGCCTCCGCT-CTTGG 284
Query 221 AAAATTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTCCATAATTAAAGGAAA 280
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 285 AAAATTTGGAGATTACCAATGTAACAACGCAATGGGACTATGGTCCATAATTAAAGGAAA 344
Query 281 GGGTACTCAGTTCAAGGGTCCTCCAGCTGTTGGACTGGCCCTTGTTAAGAGTCTCCCTAC 340
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 345 GGGTACTCAGTTCAAGGGTCCTCCAGCTGTTGGACAGGCCCTTGTTAAGAGTCTCCCTAC 404
Query 341 TTCTGAGATGGTGGAATCATGCTCTGTAGCTAGACCTGGCTATATTAATGTCGTACTATC 400
|||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 405 TTCTGAGATGGTAGAATCATGCTCTGTAGCTGGACCTGGCTTTATTAATGTTGTACTATC 464
Query 401 AGCTAAGTGGATGGCTAAG 419
|||||||||||||||||||
Sbjct 465 AGCTAAGTGGATGGCTAAG 483
Score = 448 bits (242), Expect = 8e-125
Identities = 306/335 (91%), Gaps = 11/335 (3%)
Strand=Plus/Plus
Query 841 GGTACTGGCTCGATGAAGAGAAAGCTCAGTGGATGATATATAACACCGCTGCTGGCCAGG 900
||||| ||||| |||||||||||||| ||||||| |||||| |||| || |||||||
Sbjct 1148 GGTACCGGCTCAATGAAGAGAAAGCTGAGTGGATCATATATGTGACCGATGTTGGCCAGC 1207
Query 901 AGCAGCAC-TTAAGTACGTTCTTC--A------A-AAAAGAAGGTTGGCTTCCAGGCAAT 950
|||||||| |||| || ||||||| | | ||||| |||||||||||||| ||||
Sbjct 1208 AGCAGCACTTTAA-TATGTTCTTCAAAGCTGCCAGAAAAGCAGGTTGGCTTCCAGACAAT 1266
Query 951 GAGAAAACTTACCCTAGAGTTAACCATGTTGGTTTTGGTCTCGTCCTTGGGGAAGATGGC 1010
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GATAAAACTTACCCTAGAGTTAACCATGTTGGTTTTGGTCTCGTCCTTGGGGAAGATGGC 1326
Query 1011 AAGCGATTTAGAACTCGGGCAACAGATGTAGTCCGCCTAGTTGATTTGGTAGATGAGGCC 1070
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1327 AAGCGATTTAGAACTCGGGCAACAGATGTAGTCCGCCTAGTTGATTTGCTAGATGAGGCC 1386
Query 1071 AAGACTCGCAGTAAACTTGCCCTTATTGAGCGCGGTAAGGACAAAGAATGGACACCAGAG 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1387 AAGACTCGCAGTAAACTTGCCCTTATTGAGCGCGGTAAGGACAAAGAATGGACACCGGAA 1446
Query 1131 GAACTGGACCAAACAACTGAGGCAGTTGGATATGG 1165
||||||||||||||| |||||||||||||||||||
Sbjct 1447 GAACTGGACCAAACAGCTGAGGCAGTTGGATATGG 1481
> AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic |
chr1:24818911-24822342 REVERSE LENGTH=1991
Length=1991
Score = 448 bits (242), Expect = 8e-125
Identities = 371/430 (86%), Gaps = 21/430 (5%)
Strand=Plus/Plus
Query 418 AGTTGATTTTTCCTCTCCCAACATTGCAAAATAAATACATGTTGGTCATCTTAAGATCAA 477
||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||
Sbjct 461 AGTTGATTTTTCCTCTCCCAACATTGCTAAAGAAATGCATGTTGGTCATCTT-AGATCAA 519
Query 478 CTATCATCGGTGACA-TGCTAGCTCGCATGCTCGAGTACTCAAAGGTTGAAGTTCTACGC 536
||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 CTATCATTGGTGACACT-CTAGCTCGCATGCTCGAGTACTCAAAGGTTGAAGTTCTTCGC 578
Query 537 AGAAACCATGTTGATGATTGGGGAACAAAGTTTGGCATGCTAATTGAGTACCTCTTTGAG 596
||||||||||||| ||| ||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 579 AGAAACCATGTTGGTGACTGGGGAACACAGTTTGGGATGCTAATTGAGTTTCTCTTTGAG 638
Query 597 AAATTTCCTGATACAGATAGTGTGATCGAGACAG--AT-GTCGTTTTTGATAGGTGTTTT 653
||||||||||||||||| ||||||| |||||||| || | | | || | ||||||||
Sbjct 639 AAATTTCCTGATACAGAGAGTGTGACCGAGACAGCTATTGGAGATCTTCA--GGTGTTTT 696
Query 654 ACA-AGGCATCaaaaaaaGAAATTTGATCTGGATGAGGACTTTAAGGAAAGAGCACAACA 712
||| || ||||||| |||||||||| || || || |||||||||| |||||||||
Sbjct 697 ACAGAGA-ATCAAAATT-GAAATTTGATTTGAATCCTGAGTTTAAGGAAAAAGCACAACA 754
Query 713 AGCTGTGGTCCGTCTACAGGCGCAGGGTGGTGATCCTGTTTACCGTAAGGCTTGGGCTAA 772
|||||||||||||| |||| | ||| |||||||||||||| |||| ||||||||
Sbjct 755 GGCTGTGGTCCGTCTTCAGG-G-----TGGAGATCCTGTTTACCGCCAGGCATGGGCTAA 808
Query 773 GATCTGTGAAATCAGCCGAA-CTGAGTTTGCCAAGGTTTATCAA-CGCCTTCGAGTTGAG 830
||| || ||||||||||||| | ||||||||||||||||| ||| ||||||||| | |||
Sbjct 809 GATTTGCGAAATCAGCCGAAAC-GAGTTTGCCAAGGTTTA-CAAACGCCTTCGAATCGAG 866
Query 831 CTTGAAGAAA 840
||||||||||
Sbjct 867 CTTGAAGAAA 876
Score = 327 bits (177), Expect = 1e-88
Identities = 273/317 (86%), Gaps = 15/317 (5%)
Strand=Plus/Plus
Query 106 AAGAATTTACGGGAAATCTAAAACGCCAACTCGCGAAGCTCTTGGTTGTGT-GTCTAAAA 164
||||||| || ||||||| || |||||||||||| |||||||| | ||||| | || ||
Sbjct 88 AAGAATTCACCGGAAATCCAAGACGCCAACTCGCTAAGCTCTTCGATGTGTCG-CTTAAG 146
Query 165 TTAACGGTTCCTGATGAACCTAGTTTTGAGCCCTTGGTGGCTGCCTCCGCTGCTGGAAAA 224
|||||||||||||||||||||| | ||||||||||| | | | || |||| |||
Sbjct 147 TTAACGGTTCCTGATGAACCTAATGTTGAGCCCTTGAT--C-G----AGC--CTGGCAAA 197
Query 225 TTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTC-CATAATTAAAGGAAAGGG 283
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 198 TTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTCTC-TAATTAAAGGAAAGGG 256
Query 284 TACTCAGTTCAAG-GGTCCTCCAGCTGTTGGACTGGCCCTTGTTAAGAGTCTCCCTACTT 342
||| |||||| | |||||||| |||||||||| ||| ||| || |||||||||||||||
Sbjct 257 TACGCAGTTCC-GTGGTCCTCCCGCTGTTGGACAGGCTCTTATTCAGAGTCTCCCTACTT 315
Query 343 CTGAGATGGTGGAATCATGCTCTGTAGCTAGACCTGGCTATATTAATGTCGTACTATCAG 402
||||||||||||||||||||||| ||||| | ||||| | | ||||||| |||||||||
Sbjct 316 CTGAGATGGTGGAATCATGCTCTATAGCTGGTCCTGGATTTGTTAATGTTGTACTATCAT 375
Query 403 CTAAGTGGATGGCTAAG 419
|||||||||||||||||
Sbjct 376 CTAAGTGGATGGCTAAG 392
Score = 326 bits (176), Expect = 4e-88
Identities = 279/326 (86%), Gaps = 17/326 (5%)
Strand=Plus/Plus
Query 853 ATGAAGAGAAAGCTCAGTGGATGATATATAACACCG-CTGCTGGCCAGGAGCAGCACTTA 911
|||||||||||||| ||||||| |||||| |||| | | ||||||| ||||||| ||
Sbjct 1069 ATGAAGAGAAAGCTGAGTGGATTATATATGTGACCGAC-GTTGGCCAGCAGCAGCA-TTT 1126
Query 912 AG-TACGTTCTTC--A------A-AAAAGAAGGTTGGCTTCCAGGCAATGAGAAAACTTA 961
| || ||||||| | | ||||| ||| |||||||||| | |||| ||||||||
Sbjct 1127 TGATATGTTCTTCAAAGCTGCCAGAAAAGCAGGATGGCTTCCAGACGATGATAAAACTTA 1186
Query 962 CCCTAGAGTTAACCATGTTGGTTTTGGTCTCGTCCTTGGGGAAGATGGCAAGCGATTTAG 1021
||||||||||| |||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 1187 CCCTAGAGTTAGCCATGTTGGTTTTGGTCTTGTCCTTGGAGATGATAACAAGCGATTTAG 1246
Query 1022 AACTCGGGCAACAGATGTAGTCCGCCTAGTTGATTTGGTAGATGAGGCCAA-GACTCGCA 1080
|||||||||| |||| ||||||||||||| ||||||| ||||||||||||| || |||||
Sbjct 1247 AACTCGGGCAGCAGAGGTAGTCCGCCTAGCTGATTTGCTAGATGAGGCCAAGGA-TCGCA 1305
Query 1081 GTAAA-CTTGCCCTTATTGAGCGCGGTAAGGACAAAGAATGGACACCAGAGGAACTGGAC 1139
||||| | |||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1306 GTAAAGC-TGCCCTTATTGAGCGCGGTAAGGACAAAGAATGGTCACCCGAGGAGCTGGAC 1364
Query 1140 CAAACAACTGAGGCAGTTGGATATGG 1165
|||| | |||||||||||||||||||
Sbjct 1365 CAAATAGCTGAGGCAGTTGGATATGG 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5