BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935990
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02470.1 | Symbols: AL6 | alfin-like 6 | chr2:652580-654915 ... 1225 0.0
AT1G14510.1 | Symbols: AL7 | alfin-like 7 | chr1:4961886-496442... 697 0.0
> AT2G02470.1 | Symbols: AL6 | alfin-like 6 | chr2:652580-654915
FORWARD LENGTH=1322
Length=1322
Score = 1225 bits (663), Expect = 0.0
Identities = 756/799 (95%), Gaps = 14/799 (2%)
Strand=Plus/Plus
Query 6 CATCGTCTGTGAGAAATGGAAGGAATCACTCATCCAATACCTCGTACTGTTGAAGAGGTC 65
|||||| | || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 245 CATCGT-T-TGTGAAATGGAGGGAATTACTCATCCAATACCTCGTACTGTTGAAGAGGTC 302
Query 66 TTTAGCGACTTCAGAGGTCGACGAGCTGGTCTTATTAAAGCTCTCACAAATGATATGGTG 125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 TTTAGCGACTTCAGAGGTCGACGAGCTGGTCTTATTAAAGCTCTCACTAATGATATGGTG 362
Query 126 AAGTTTTACCAAACGTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAAT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAGTTTTACCAAACGTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAAT 422
Query 186 GAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCT 482
Query 246 TTGGGCATTAACTTCGCAAGAGATGGAATGCAAGAAAAGGACTGGGTGTCTTTGGTCGCG 305
|| ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 483 TTAGGCATCAATTTCGCTAGAGACGGAATGCAAGAAAAGGACTGGGTATCTTTGGTCGCA 542
Query 306 GTTCACAGTGATTCATGGTTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTT 365
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTT 602
Query 366 GGTAAGAACGAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAA 425
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GGCAAGAATGAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAA 662
Query 426 GTTGTGAGCGGCAGCAATGCAAATCAGTCCAAGGATCTATCTGTTAACAACAGCAATAGC 485
||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 663 GTTGTGAGC-G--GCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAATAGC 719
Query 486 AAAAGCAAACCTAGTGGCATCAAGTCGCGCCAATCCGAATCTCTCACAAAGGTTGCAAAG 545
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 720 AAAAGCAAACCTAGTGGCGTCAAGTCTCGCCAATCCGAATCTCTCTCAAAGGTTGCAAAG 779
Query 546 ATGTCATCTCCACCGCCAAAAGAAGAAGATGATG-AG-AG-TGA-A--GACGA-G-GA-A 596
||||||||||||||||||||||||||||| || | || || ||| | || || | ||
Sbjct 780 ATGTCATCTCCACCGCCAAAAGAAGAAGAAGAAGAAGAAGATGAGAGTGAAGATGAGAGT 839
Query 597 GAGGACGATGAACAAGGTGCGGTTTGTGGCGCTTGTGGAGACAACTACGGTACAGATGAG 656
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GAAGACGATGAACAAGGTGCGGTTTGTGGTGCTTGTGGAGACAACTACGGTACAGATGAG 899
Query 657 TTCTGGATTTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCTGGATTTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACA 959
Query 717 CCTGCAAAAGCAGAACACATCAAGCATTACAAATGCCCAAGTTGCAGTAACAAGAGAGCC 776
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 CCTGCAAAAGCAGAACACATCAAGCATTACAAATGCCCAACTTGCAGTAACAAGAGAGCT 1019
Query 777 AGACCTTGAAGTTTAATAA 795
||||||||||||| |||||
Sbjct 1020 AGACCTTGAAGTTAAATAA 1038
> AT1G14510.1 | Symbols: AL7 | alfin-like 7 | chr1:4961886-4964428
REVERSE LENGTH=1318
Length=1318
Score = 697 bits (377), Expect = 0.0
Identities = 630/750 (84%), Gaps = 25/750 (3%)
Strand=Plus/Plus
Query 21 ATGGAAGGAA-TCACTCATCCAATACCTCGTACTGTTGAAGAGGTCTTTAGCGAC-TTCA 78
|||||||||| ||| ||||| |||||||| ||||| |||||||| ||||||||| |||
Sbjct 275 ATGGAAGGAATTCA-GCATCCTATACCTCGCACTGTCGAAGAGGTTTTTAGCGACTTTC- 332
Query 79 GAGGTCG-ACGAGCTGGTCTTATTAAAGCTCTCACAAATGATATGGTGAAGTTTTACCAA 137
| ||||| | |||||||||| || || |||||| | | |||| | ||||||||||| |
Sbjct 333 GTGGTCGTA-GAGCTGGTCTCATCAAGGCTCTCTCTACTGATGTACAGAAGTTTTACC-A 390
Query 138 AC-GTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGA 196
| |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 391 TCAGTGTGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGA 450
Query 197 GGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTGGGCATTAA 256
||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||
Sbjct 451 GGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAA 510
Query 257 CTTCGCAAGAGATGGAATGCAAGAAAAGGACTGGGTGTCTTTGGTCGCGGTTCACAGTGA 316
|||||||| || |||||||||||||| |||||| | |||||||| || |||||||||||
Sbjct 511 TTTCGCAAGGGACGGAATGCAAGAAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGA 570
Query 317 TTCATGG-TTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAACG 375
||||||| || | |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 571 TTCATGGCTT-ATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATG 629
Query 376 AGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCG 435
||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
Sbjct 630 AGAGGAAGAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAA-CT 688
Query 436 GCAGCAATGCAAATCAGTCCAAGGATCTATCTGTTAACAACAGCAATAGCAAAAGCAAAC 495
| |||||||||| || |||||||||| ||||| |||| ||| || ||||| |||||||
Sbjct 689 G--GCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAAT 746
Query 496 CTAGTGGCATCAAGTCGCGCCAATCCGAATCTCTCACAAAGG-TTGCAAAGATGTCATCT 554
||||||| |||| | || || || ||||||| ||| |||| || |||||||||| ||
Sbjct 747 CTAGTGGTGGCAAGCCTCGTCATTCTGAATCTCACACTAAGGCTT-CAAAGATGTCCCCT 805
Query 555 CCACCGCCAA-AAGAAGAAGATGATGAGAGTGAAGACGAGGAAGAGGACGATGAACAAGG 613
||||| || || |||||||||| ||| | || || ||||| || || || || |||||
Sbjct 806 CCACC---AAGAA-AAGAAGATGA-GAGCG-GA-GATGAGGATGAAGATGACGAGCAAGG 858
Query 614 TGCGGTTTGTGGCGCTTGTGGAGACAACTACGGTAC-AGATGAGTTCTGGATTTGCTGCG 672
||| |||||||| || ||||| |||||||| || | ||||||||||||||| || || |
Sbjct 859 TGCTGTTTGTGGTGCGTGTGGCGACAACTATGG-AGGAGATGAGTTCTGGATATGTTGTG 917
Query 673 ACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACACCTGCAAAAGCAGAAC 732
| || || ||||||||||||||||| ||||| |||||||| ||||| ||||| || || |
Sbjct 918 ATGCTTGCGAGAAATGGTTCCATGGGAAATGCGTGAAGATCACACCAGCAAAGGCTGAGC 977
Query 733 ACATCAAGCATTACAAATGCCCAAGTTGCA 762
| ||||| ||||||||||||||||||||||
Sbjct 978 ATATCAAACATTACAAATGCCCAAGTTGCA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5