BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935992
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02498.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 366 7e-101
AT2G02490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 176 1e-43
> AT2G02498.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G02490.1); Has
97 Blast hits to 69 proteins in 24 species: Archae - 0; Bacteria
- 0; Metazoa - 9; Fungi - 10; Plants - 45; Viruses -
0; Other Eukaryotes - 33 (source: NCBI BLink). | chr2:669760-670204
FORWARD LENGTH=445
Length=445
Score = 366 bits (198), Expect = 7e-101
Identities = 309/363 (85%), Gaps = 5/363 (1%)
Strand=Plus/Plus
Query 6 AATCACAAACAAAAATATGAAAATGATTGTGAAGTTCTCTCCAATAACAATGGTGGTTAC 65
|||||||||||||| |||||||||||| || ||| ||| ||||||||||| ||||||||
Sbjct 1 AATCACAAACAAAATTATGAAAATGATGGTAAAGCTCTATCCAATAACAACCGTGGTTAC 60
Query 66 CCTGTTCTTTCTTGTATTTGGTCTTGCCCATGCTAGATACCCAACTTTACCAATCGTGAA 125
| || ||||||||| |||||||||||||| |||||||||||| ||||| |||| || |
Sbjct 61 CTTGCTCTTTCTTGCATTTGGTCTTGCCCTTGCTAGATACCCGACTTTTCCAACCGAGCC 120
Query 126 ACCTCCTCCTCCACCAAACCAGAATGTGAAGATATCAGTAAACCAAATTCAAG---TCCC 182
| ||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||
Sbjct 121 ATTTCCTCCTCCACCAAACCAGAATGAGAATATATCAGTAAACCAATTTCAAGTTATCCC 180
Query 183 GCATCTACCATCTCCTCCAAAATATCCAGGACATCCACCACACCAAAAT-ACAAAGGTAT 241
|||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||
Sbjct 181 ACATCTACCATGGCCTCCAAAACGCCCAGGACATCCACCCCACCAAAATGCCAAA-GTCG 239
Query 242 CAGTGAATCAATTTCCAGGCGTATTTCCAATTCCTCATTATCCAGAACCTCCAAAACATC 301
||||||| |||| || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGTGAACCAATACCCGGGCATAATTCCAATTCCTCATTATCCAGAACCTCCAAAACATC 299
Query 302 CAGGACATCCACCACACCAAAATGCGAAAATATCATTGAACTAATACCCATACATATGTT 361
|||||||||| || | || || |||| |||||| |||||||||| ||||||||||||
Sbjct 300 CAGGACATCCGCCTTATCAGTATCCGAAGATATCACCGAACTAATACTCATACATATGTT 359
Query 362 TTT 364
|||
Sbjct 360 TTT 362
> AT2G02490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G02498.1); Has
15354 Blast hits to 8672 proteins in 603 species: Archae -
18; Bacteria - 877; Metazoa - 6845; Fungi - 2630; Plants -
2695; Viruses - 515; Other Eukaryotes - 1774 (source: NCBI BLink).
| chr2:667041-668284 FORWARD LENGTH=1244
Length=1244
Score = 176 bits (95), Expect = 1e-43
Identities = 272/354 (77%), Gaps = 26/354 (7%)
Strand=Plus/Plus
Query 1 TTTTTAATCACAAACAAAAATATGAAAATGATTGTGAAGTTCTCTCCAATAACAATGGTG 60
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 70 TTTATAATCACAAACAAAAATATGAAAATGATGGTGAAGCTCTCTCCAATAACAATGATG 129
Query 61 GTTACCCTGTTCTTTCTTGTATTTGGTCTTGCCCATGCTAGATACCCAACTTTACCAATC 120
||||| || ||||||||| |||||| ||||| || ||||||||| | | ||| |||| |
Sbjct 130 GTTACTCTACTCTTTCTTGCATTTGGCCTTGCGCAGGCTAGATACTCGATTTTCCCAACC 189
Query 121 GTGAAACCTCCTCCTCCACCAAACCAGA--ATGTGAAG-A-TATC-AGTAAACCAAATTC 175
| | | || | |||| || |||| | | ||||| | |||| || | | |||
Sbjct 190 GAGCATT-TCTTTTTCCATCACACCATATCA-GTGAACCAATATCCAGGAGT--AT-TTC 244
Query 176 -AAGTCCCGCATCTACCATCTCCTCCAAAATATCCAGGACATCCACCACACCAAAATACA 234
|| ||| |||| | | ||| || | || |||||||||||||||||||| |
Sbjct 245 CAATTCCT-CATCCAG--T-TCCACCT---TCGCCGGGACATCCACCACACCAAAACGCG 297
Query 235 AAGGTATCAGTGAATCAATTTCCAGGCGTATTTCCAATTCCTCATTATCCAGAACCTCCA 294
||| |||||||||| |||| |||| |||||||||||||||||||| |||| || |||
Sbjct 298 AAGATATCAGTGAACCAATATCCAAGCGTATTTCCAATTCCTCAT---CCAGTTCCACCA 354
Query 295 AAACATCCAGGACATCCACCACACCAAAATGCGAAA-ATATCATTGAACTAATA 347
|| || |||||||||||||||||||| | ||| |||||| ||||| ||||
Sbjct 355 T--CA-CCGGGACATCCACCACACCAAAACAC-AAAGATATCAGTGAACCAATA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5