BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935995
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 411 3e-114
> AT2G02515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: central
cell, embryo; EXPRESSED DURING: C globular stage; Has 18 Blast
hits to 17 proteins in 2 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:675256-675656 FORWARD
LENGTH=401
Length=401
Score = 411 bits (222), Expect = 3e-114
Identities = 286/316 (91%), Gaps = 7/316 (2%)
Strand=Plus/Plus
Query 8 ACACAAATCAAAATATGAAGATGATTGTGAAACTCCCCGCAAAAACAATGGTGGTTACTC 67
||||||| |||||||||||||||||| |||| |||||||||| ||||||||||| ||||
Sbjct 1 ACACAAAACAAAATATGAAGATGATTCTGAAGCTCCCCGCAATAACAATGGTGGCTACTT 60
Query 68 TGCTTCTTCTTGCATCTGGTCTTGGTCATGCTAGGGTTGAGCCTTTTTCTCCTACGCTAA 127
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 61 TGCTTCTTCTTGCATCTGGTCTTGGTCATGCTAGGATTGAACCTTTTTCTCCTACGCTAA 120
Query 128 ATCCAAAATTTCAAACCGACTCTAAACCGTTTTATCCACCGATTATCCCAACCGAGCCAT 187
| ||||||||||||| ||| |||||||||||| |||||||| |||| |||||||| ||||
Sbjct 121 AGCCAAAATTTCAAATCGATTCTAAACCGTTTAATCCACCGGTTATTCCAACCGAACCAT 180
Query 188 TTCCTCCTCCACCTCCATCGAACCATGATGCGGTGATATCAGTG-AAGCAATTCCCAGTT 246
||||||| ||||||| |||||||||| ||| ||||||||||| || ||||||||||||
Sbjct 181 TTCCTCC---ACCTCCACCGAACCATGACGCGATGATATCAGTGCAA-CAATTCCCAGTT 236
Query 247 AGACCTTATTGTCGTCCTGGTTATCAAAATCCTGGATGTCCCCCATCATCTTAGAC-GTT 305
| ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 237 ATACCTTATTGTCCTCCAGGTTATCAAAATCCCGGATGTCCACCATCATCTTAGACTGT- 295
Query 306 CTCCAAAAAATGATAT 321
||||||||||||||||
Sbjct 296 CTCCAAAAAATGATAT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5