BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935996

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57250.1 | Symbols:  | Emsy N Terminus (ENT) domain-containi...   374    4e-103


> AT3G57250.1 | Symbols:  | Emsy N Terminus (ENT) domain-containing 
protein | chr3:21186719-21187251 FORWARD LENGTH=429
Length=429

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 313/367 (85%), Gaps = 6/367 (2%)
 Strand=Plus/Plus

Query  1    TTGAGCGAACAGGAGAAGAAGCAAATGCTTAAAGAGCTCGAGAAGCAGGCCTATGAAGCA  60
            ||||||||||||||||||||||| ||| |||||||| || || ||||||||||||| || 
Sbjct  25   TTGAGCGAACAGGAGAAGAAGCAGATGATTAAAGAGATCCAGGAGCAGGCCTATGAGGCG  84

Query  61   TTACTTTGTGCCTTTGGCGTGGAAAACAAGGTGATCGA-TGATGATGTGAAGAACCTATT  119
            || || |  || |||||||||||||| ||| ||||| | |||||||||||||||||||||
Sbjct  85   TTGCTATACGCATTTGGCGTGGAAAAGAAGATGATC-AGTGATGATGTGAAGAACCTATT  143

Query  120  GAACATCGAACAAGAGTCTGCAGAGGAAAGGAACAAGAAGGCGTATGAAGC--CTTCTTG  177
            |||||||||||| |||||||||||||||| ||  |||| |||||| |||||  || || |
Sbjct  144  GAACATCGAACAGGAGTCTGCAGAGGAAAAGAGGAAGATGGCGTACGAAGCAACT-CT-G  201

Query  178  CTTGCAACGACACTCAATTATTCCTCGGCAGAATCCCGTGATGCTATGTTAGCTAGGTTG  237
            |||||  | ||| ||| | |||||| |||| ||  ||| |||| | ||||||||| ||||
Sbjct  202  CTTGCCGCCACATTCAGTCATTCCTTGGCAAAAGACCGCGATGGTGTGTTAGCTACGTTG  261

Query  238  AGGAATCAACTTCATATAACTGATGGCTTCCATAGGGAATGCCAGAATCGTGTCAGCAAC  297
            | ||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |||
Sbjct  262  AAGAATCAACTCCATATAACTGATGACTTTCACAGGGAATGCCAGAATCGTGTCAGGAAC  321

Query  298  AACATTTCAGTCGTCCAATTGACTCGAGAAGCATCCGGCTCGAACAACGTAGGTTAAACA  357
            ||||||| |||||||||||||||| |||||||||||||||||||  | |||||  |||||
Sbjct  322  AACATTTTAGTCGTCCAATTGACTGGAGAAGCATCCGGCTCGAATTATGTAGGCGAAACA  381

Query  358  AGGTGGA  364
             ||||||
Sbjct  382  GGGTGGA  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5