BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936001
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02570.1 | Symbols: | nucleic acid binding;RNA binding | ch... 1465 0.0
> AT2G02570.1 | Symbols: | nucleic acid binding;RNA binding |
chr2:697951-700917 REVERSE LENGTH=1302
Length=1302
Score = 1465 bits (793), Expect = 0.0
Identities = 895/945 (95%), Gaps = 3/945 (0%)
Strand=Plus/Plus
Query 1 GTTTTGAGTTTGGAG-AAAAGATGGAAGGAGGAGTTGAAGAATTGAGCATCCAAGTGTTA 59
||||||||||||| | |||| |||| ||||||||| ||||||||||| || || ||||
Sbjct 104 GTTTTGAGTTTGG-GTAAAAAATGGTAGGAGGAGTAGAAGAATTGAGTATTGAACAGTTA 162
Query 60 GCTTCGAATCTCTCTACCTACAAAGAACAGCTCGAACAGGTTAGGCAGCTTTTGTCAGAG 119
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 163 GCTTCGAGTATCTCTACCTACAAAGAACAACTCGAACAGGTTAGGCAGCTTTTGTCAGAG 222
Query 120 GACCCTAGAAACTTGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 179
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTG 282
Query 180 ACAGAAGAACTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCGGATGCTGGAGTT 239
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 283 ACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTT 342
Query 240 AGTGCTGAAGCAACTACTGGCTCACCCGATTTAGAGAGTGCTTGGGAAAACATGGGTTCA 299
||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||| |
Sbjct 343 AGTGCTGAAGCAACTCCTGGCTCACCCGATTTAGAGGGTGCTTGGGAAAAGACGGGTTTA 402
Query 300 AGGAATAACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACAAAAGTTCAAGCTGTCTTT 359
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 AGGAATGACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACTAAAGTTCAAGCTGTCTTT 462
Query 360 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCGAATGGCTATTTT 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 463 AGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCAAATGGCTATTTT 522
Query 420 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTTGATCCAGAAAATGTGAGGCCAATC 479
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 523 GTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTGGATCCAGATAATGTGAGGCCAATC 582
Query 480 GAGCAAAATGCTATCGTGGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 539
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGCAAAATGCTATTGTCGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAA 642
Query 540 AGAAAGATTGAGCAAGCTGCGAGTTCTGACTACCAGACTAAAACTCTACCAGCAAAGCTT 599
|||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 643 AGAAAGATTGAGAAAGCTGCGAGTTCTGATTATCAGACAAAAACTCTACCAGCAAAGCTC 702
Query 600 AAAATCGATCCTAATGATCCTGAGGATGTAAAAATAGCAAAGCGTAAGAAGATTCATGCT 659
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 703 AAAATCGATCCTAATGATCCCGAGGATGTAAAAATAGCTAAGCGTAAGAAGATACATGCT 762
Query 660 TTCAAGTCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTACAGAACAAGAAACAGAATGAT 719
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 763 TTCAAATCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTGCAGAACAAGAAACAGAATGAT 822
Query 720 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGG 882
Query 780 AAGAAAGAGAGTATATTCAAATCACCAGAAGATCCATTTGGTAAAGTGGGTGTGACTGGA 839
||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 883 AAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGA 942
Query 840 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGT 1002
Query 900 AATGGTGAGGGCACTGATGAATGAAGGAGAGATTTT-ATGTTTTT 943
|||| |||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1003 AATGCTGAGGGCACTGATGAATGAACGAGAGATTTTTATGCTTTT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5