BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936002
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02590.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1530 0.0
> AT2G02590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Putative
small multi-drug export (InterPro:IPR009577); Has 405 Blast
hits to 405 proteins in 185 species: Archae - 65; Bacteria
- 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 22 (source: NCBI BLink). | chr2:704918-706669
FORWARD LENGTH=1209
Length=1209
Score = 1530 bits (828), Expect = 0.0
Identities = 953/1015 (94%), Gaps = 1/1015 (0%)
Strand=Plus/Plus
Query 1 TCAAACCTGAATTaaaaaaaaTGGCGATTTCTACATTACTCTCAATCTCTTCTTTCACTC 60
||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TCAAAGCTGAACT-ATAAAAATGGCGATTTCTACATTACTCTCAATCTCTTCTTTCACTC 99
Query 61 TATCTTCTTCCTCATCAACAAAAACCCATCTCCTAACTTCAACACCCACTTCTAGGGTTT 120
|||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||
Sbjct 100 TATCTTCTTCCTCATCAACAAAAACCCATCTCCTTACTTCAATACCTGCTTCAAGGGTTT 159
Query 121 ATTCATCTCCGAGTTCTCCAAAATCAAAGCAAAATCGTTTACTACAGAGTCAAAGTTTCA 180
|||| | ||| | ||| || |||| ||||||| |||||| || ||||||||||||| ||
Sbjct 160 ATTCTTATCCAATTTCACCCAAATGGAAGCAAATTCGTTTCCTGCAGAGTCAAAGTTCCA 219
Query 181 GTCTTTTCCACCCATTACGCCGTAATTTCACCAGATTCTGTTCTTCTCCAGATGGGTTTC 240
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 220 GTCTTTTCTATCCATTACGCCGCAATTTCACCAGATTCTGTTCTTCTCCAGATGGGTTTC 279
Query 241 TCAGAAAAACCAAAGAAGACGAAGAAGGAAACGAAATCATCCAGCTTCCGTCTATTGGTG 300
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 280 TCAGAAACACCAAAGACGACGAAGAAGGAAACGAAATCATTCAGCTTCCGTCTATTGGTG 339
Query 301 TAAACCCTGTCAAATTCGCGATTTGCGTTGTGTTGTGGGCTTCTTTCTCTTTGCTTTGGT 360
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 340 TAAACCCTGTGAAATTCGCGATTTGCGTTGTGTTGTGGGCTTCTTTCTCTCTGCTTTGGT 399
Query 361 TTGCTAGGTCTGGAGATGCTAAAGCTGCGACTGATTCAATCAAATCTTCGAGCTTTGGTC 420
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 400 TTGCTAGGTCTGGAGATGCCAAAGCTGCGACTGATTCTATCAAATCTTCGAGCTTTGGTC 459
Query 421 TCAAAATCGCCTCCACTCTTCGCCGTTTTGGTTGGCCAGACGAAGCTGTGGTGTTTGCTT 480
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 460 TCAGAATCGCCTCCACTCTTCGCCGTTTTGGTTGGCCAGACGAAGCTGTTGTGTTTGCTT 519
Query 481 TAGCTACTCTTCCGGTTATTGAACTCCGTGGTGCTATTCCTGCTGGTTACTGGATGCAGC 540
|||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct 520 TAGCTACTCTTCCGGTTATTGAACTCCGTGGTGCCATTCCTGTTGGTTATTGGATGCAAC 579
Query 541 TAAAACCTATAGTTCTCACTTTCTTCTCTGTTCTTGGCAATATGGTTCCGGTTCCATTCA 600
||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 580 TAAAACCGGTGGTTCTCACTTCCTTCTCTGTTCTTGGCAATATGGTTCCAGTTCCATTCA 639
Query 601 TCGTACTTTACCTCAAAAAGTTTGCATCTTTTGTGGCGGGTAAGAGCCAAACAGCTTCTA 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TCGTACTTTACCTCAAAACGTTTGCATCTTTTGTGGCGGGTAAGAGCCAAACAGCTTCTA 699
Query 661 AACTACTTGATATCCTATTCAAAAGAGCTAAAGAGAAAGCTGGGCCAGTGGAAGAGTTCC 720
|| ||||||||||| | || ||||||||||||||||||||||| || ||||||||||||
Sbjct 700 AATTACTTGATATCTTGTTTAAAAGAGCTAAAGAGAAAGCTGGACCTGTGGAAGAGTTCA 759
Query 721 AATGGTTAGGGCTAATGCTCTTTGTAGCTGTTCCGTTCCCTGGAACCGGTGCTTGGACAG 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 760 AATGGTTAGGGCTAATGCTCTTTGTAGCTGTTCCATTCCCTGGAACCGGTGCTTGGACAG 819
Query 781 GAGCTATAATAGCATCGATCCTCGACATGCCGTTTTGGCCTGCTGTTTCGTCTAATTTCT 840
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 820 GAGCTATAATAGCATCAATCCTCGACATGCCGTTTTGGTCTGCTGTTTCGTCTAATTTCT 879
Query 841 GCGGTGTAGTGTTGGCTGGACTGCTGGTGAATTTGCTGGTGAATCTAGGTTTGAAACAAG 900
||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||
Sbjct 880 GCGGTGTAGTGTTGGCTGGACTGTTGGTGAACTTGCTGGTAAATCTTGGTTTGAAACAAG 939
Query 901 CCATTGTTGCTGGTATAGCTCTCTTCTTTGTATCTACATTTATGTGGAGCGTTCTCAGAA 960
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 940 CCATTGTAGCTGGTATTGCTCTCTTCTTTGTATCTACGTTTATGTGGAGCGTTCTCAGAA 999
Query 961 ACATTAGGAAGTCTATAAAACCATCGTTGCCTTGAATTGGTTATTAGATATTTAG 1015
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1000 ACATTAGGAAGTCTATAAAACCATCGTTGCCTTGAATTCGTTATTAGATACTTAG 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5