BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936010
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02730.1 | Symbols: | Protein of unknown function (DUF1664)... 1448 0.0
> AT2G02730.1 | Symbols: | Protein of unknown function (DUF1664)
| chr2:764604-767436 REVERSE LENGTH=1523
Length=1523
Score = 1448 bits (784), Expect = 0.0
Identities = 843/872 (97%), Gaps = 2/872 (0%)
Strand=Plus/Plus
Query 2 CACCTGTGAGTCTGCGACCATGGCTATGCAATCTGGAATTGGGTTATCGAAGATTTTGAT 61
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 82 CACCTGTGAGTCTGCGACCATGGCTATGCAATCTGGTATTGGGTTATCGAAGATTTTGAT 141
Query 62 TTTAGCTGGAGCAGGTTATACTAGTACGATTCTGGTTAAGAATGGGAAGATGGCAGATAT 121
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TCTAGCTGGAGCAGGTTATACTAGTACGATTCTGGTTAAGAATGGGAAGATGGCAGATAT 201
Query 122 TTTGGGTGAGCTTCAGGCTTTGGTTAAGAGATTTGAGAAATCTGGAGATCATGTAGATGA 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 202 TTTGGGTGAGCTTCAGGCTTTGGTTAAGCGATTTGAGAAATCTGGAGATCATGTAGATGA 261
Query 182 TGATTCTGATGCTATGACTACTCAGATGCAACGGTTAGCAATGGAGGTTCGGCAATTGGC 241
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 262 TGATTCTGATGCCATGACTACTCAGATGCAACGATTAGCAATGGAGGTTCGGCAATTGGC 321
Query 242 TTCGTCGCGGCAGATAACTGTTATGAATGGAGCTCAGGGAGCTGACTTTACCCCGTTTAT 301
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 322 TTCGTCGCGGCAGATAACTGTTATGAATGGAGCTCAGGGAGCTGATTTTACACCGTTTAT 381
Query 302 AGTCCCGGCAGCCACATTGGGAGCTTTAGGCTATGGCTATATGCGATTCAAGGGGATTTC 361
||||||||||| ||||||||||| |||||||||||||||||| | |||||||| |||||
Sbjct 382 TGTCCCGGCAGCGACATTGGGAGCATTAGGCTATGGCTATATGTGGTTCAAGGGAATTTC 441
Query 362 ATTCTCTGATATCATGTGTGTAACTAAGCGGAACATGGAAAATGCAGTGTCGAACTTGAC 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 442 ATTCTCTGATATCATGTGTGTAACGAAGCGGAACATGGAAAATGCAGTGTCGAACTTGAC 501
Query 422 AAAGCATTTGGATACCGTTTCAGAAGCTATCTCT-AATGCTAAGAAGCACCTGAGCCAGC 480
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 502 CAAGCATTTGGATACCGTTTCAGAAGCTAT-TTTGAATGCTAAGAAGCACCTGAGCCAGC 560
Query 481 GGCTTCAGAAGGTGGACGATAAGCTGGACTTGCAGAAGGATCTCTTAAAGGGAGTCCAGG 540
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 561 GGCTTCAGAAGGTGGACGATAAGCTAGACTTGCAGAAAGATCTCTTAAAGGGAGTCCAGG 620
Query 541 ATAATGTGGGTTTGGCTCTTGAGGATCTTGCTAACATTGGAGATGATTTTGACGCAATGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATAATGTGGGTTTGGCTCTTGAGGATCTTGCTAACATTGGAGATGATTTTGACGCAATGC 680
Query 601 ATAGCATCTTCGGTGGTATGGGTGGAAAATTAGATAGCATTGAGTACAAGCAGAATATTG 660
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 681 ATAGCATCTTTGGTGGTATGGGTGGGAAATTAGATAGCATTGAGTACAAGCAGAATATTG 740
Query 661 CGAATATGGGTTTGATATATCTGTGTGACTCTTTGGGTGGAGAAAATCACAAGATGCCGG 720
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 741 CGAACATGGGTTTGATATATCTGTGCGACTCTTTGGGTGGAGAAAATCACAAGATGCCGG 800
Query 721 ATATATTGATGCAGGAGAAGCTTCGGCTTTCAGGGAAGTCAAACACATGTATAGTACTTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ATATATTGATGCAGGAGAAGCTTCGGCTTTCAGGGAAGTCAAACACATGTATAGTACTTA 860
Query 781 CAAACGAAGAAACTTCAACCTCAGAGGGTTTAAAAGAAAGCGATAAGATAGAGCTACTAG 840
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 861 CAACCGAAGAAACTTCAAGCTCAGAGGGTTTAAAAGAAAGCGATAAGATACAGCTACTAG 920
Query 841 ATGACTGCTAATTCAGATGGTACCAATATATC 872
||||||||||||||| ||||| ||||||||||
Sbjct 921 ATGACTGCTAATTCAAATGGTGCCAATATATC 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5