BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936012 Length=1879 Score E Sequences producing significant alignments: (Bits) Value AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3035 0.0 > AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:771151-773540 REVERSE LENGTH=2390 Length=2390 Score = 3035 bits (1643), Expect = 0.0 Identities = 1794/1868 (96%), Gaps = 6/1868 (0%) Strand=Plus/Plus Query 16 TCTAGATGATAAACCT--C---ACA-AGACACCGAGTCTTGAATCTCGTCACCGGTGGAT 69 |||||||||||||||| | ||| ||| ||||||||| ||||||||| ||||||||| Sbjct 54 TCTAGATGATAAACCTAACGAGACAGAGATACCGAGTCTCGAATCTCGTGACCGGTGGAA 113 Query 70 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 173 Query 130 AATCATGCGCGAAGCTTGGAGATGTTGTGCAAGGTCGGATTCTGCATGCCCATGTCGTCA 189 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 174 AATCATGCGCGAAGCTTGGAGATGTTGTACAAGGTCGGATTCTGCATGCCCAAGTCGTCA 233 Query 190 AAACTGGtttttttGTTGATGTGTTCACGGCGACGGCTTTGGTGAGTATGTATATGAAGG 249 ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 234 AAACTGGGTTTTTCGTTGATGTGTTCACGGCAACGGCTTTGGTGAGTATGTATATGAAGG 293 Query 250 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGAGGTATTGCGA 309 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 294 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGGGGTATTGCGA 353 Query 310 GTGTTAATGCAGCGGTTTCGGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 369 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 354 GTGTTAATGCAGCGGTTTCTGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 413 Query 370 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTGGCTAGTGTTT 429 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 414 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTTGCTAGTGTTT 473 Query 430 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAAATGCATTGTTTGGCGATGAAATCAG 489 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 474 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAATTGCATTGTTTGGCGATGAAATCAG 533 Query 490 GTTTTGAGATGGAAGTTTACGTTGGAACTTCTCTTGTTTCAATGTATTCGAGATGTGGAG 549 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 534 GTTTTGAGATGGAAGTTTACGTTGGAACCTCTCTTGTTTCAATGTATTCGAGATGTGGAG 593 Query 550 AGTGGATTTTGGCTGCGAGAATGTTCGAAAAAGTGCCTCATAAGAGTGTTGTGACCTACA 609 ||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 594 AGTGGGTTTTGGCTGCGAGAATGTTCGAAAAGGTTCCTCATAAGAGTGTTGTTACCTACA 653 Query 610 ATGCTTTTATCTCCGGATTGATGGAGAATGGAGTTATGCATTTGGTCCCTAATGTCTTCA 669 ||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||| |||| Sbjct 654 ATGCTTTTATCTCTGGATTGATGGAGAATGGAGTTATGAATTTGGTTCCTAGTGTTTTCA 713 Query 670 ATCTCATGAGGAAGTTTTCAAGTGAAGAGCCAAATGATGTTACTTTTGTTAATGCAATAA 729 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 714 ATCTCATGAGGAAGTTTTCAAGTGAAGAACCAAATGATGTTACTTTTGTTAATGCAATAA 773 Query 730 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 833 Query 790 AAACAGAGTTTCAGTTTGATACAATGGTTGGTACAGCTCTCATTGATATGTATTCAAAAT 849 ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 834 AAAAAGAGTTTCAGTTTGAGACAATGGTTGGTACTGCTCTCATTGATATGTATTCGAAAT 893 Query 850 GTCGATGTTGGAAATCAGCATACAGTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 909 |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 894 GTCGGTGTTGGAAATCAGCTTACATTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 953 Query 910 TATCTTGGAACTCTGTTATCTCTGGGATGATGCTTAATGGACAGCATGAGACAGCAGTTG 969 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 954 TATCTTGGAACTCTGTTATCTCTGGAATGATGATTAATGGACAGCATGAGACAGCAGTTG 1013 Query 970 AGCTGTTTGAACAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCGC 1029 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1014 AGTTGTTTGAAAAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCAC 1073 Query 1030 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAGTTGAAGCTTTCAAGTTCTTTGAGAGAA 1089 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1074 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAATTGAAGCTTTCAAGTTCTTTGAGAGAA 1133 Query 1090 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCGGCTTGTT 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1134 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCTGCTTGTT 1193 Query 1150 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1253 Query 1210 CTGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGTTCT 1269 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1254 CGGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGCTCT 1313 Query 1270 CGTTGTTGGCACGCCGGATATTTGATCGGTTTGAGCCGAAACCCAAGGATCCCGTGTTCT 1329 | | || |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1314 CCTCGTGGGCACGCCGGATCTTTGATCGATTTGAACCGAAACCCAAGGATCCCGTGTTCT 1373 Query 1330 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAATCTGCAATTGAAATCT 1389 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1374 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAGTCTGCAATTGAAATAT 1433 Query 1390 TCGACCTATTACGAGAGGAGGAAGTAGAACCGAGTTTAGCAACCTTCACTGCTGTTCTAT 1449 |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1434 TCGAACTATTACGAGAGGAGAAAGTAGAACCGAGTTTAGCAACCTTTACTGCTGTTCTAT 1493 Query 1450 CTGCGTGTAGTCACTGCGGCAATGTCGAGAAGGGATCTCAAATATTTAGGTTGATGCAGG 1509 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1494 CTGCGTGTAGTCACTGTGGCAATGTCGAGAAGGGTTCTCAAATATTTAGGTTGATGCAGG 1553 Query 1510 AAGAATATGGATATAAACCTAGTACAGAGCACATTGGTTGTATGGTTGATCTTTTGGGTC 1569 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1554 AAGAATATGGATATAAACCTAGTACAGAGCACATAGGTTGTATGATTGATCTTTTGGGTC 1613 Query 1570 GGTTTGGCAGATTAAGAGAAGCCAAGGAGGTAATAGATCAAATGTCAGATCCATCATCTT 1629 ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 1614 GGTCTGGGAGATTAAGAGAGGCCAAGGAGGTAATAGATCAAATGTCAGAACCATCGTCTT 1673 Query 1630 CGGTTTACTCTTCTTTGCTCGGTTCATGTAGGCAACACCTGGATCCAGTGCTTGGAGAGG 1689 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1674 CGGTTTACTCTTCCTTGCTCGGTTCATGTAGGCAACACCTAGATCCAGTTCTTGGAGAGG 1733 Query 1690 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGGGAATCCAGCTCCATTTGTGATCTTGT 1749 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1734 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGAGAATCCAGCTCCATTTGTGATCTTGT 1793 Query 1750 CCAGCATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1809 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1794 CCAGTATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1853 Query 1810 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCTGAGT 1869 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1854 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCCGACT 1913 Query 1870 GGTCCAAT 1877 |||| ||| Sbjct 1914 GGTCGAAT 1921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93021609885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5