BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936012
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3035 0.0
> AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:771151-773540 REVERSE LENGTH=2390
Length=2390
Score = 3035 bits (1643), Expect = 0.0
Identities = 1794/1868 (96%), Gaps = 6/1868 (0%)
Strand=Plus/Plus
Query 16 TCTAGATGATAAACCT--C---ACA-AGACACCGAGTCTTGAATCTCGTCACCGGTGGAT 69
|||||||||||||||| | ||| ||| ||||||||| ||||||||| |||||||||
Sbjct 54 TCTAGATGATAAACCTAACGAGACAGAGATACCGAGTCTCGAATCTCGTGACCGGTGGAA 113
Query 70 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTA 173
Query 130 AATCATGCGCGAAGCTTGGAGATGTTGTGCAAGGTCGGATTCTGCATGCCCATGTCGTCA 189
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 174 AATCATGCGCGAAGCTTGGAGATGTTGTACAAGGTCGGATTCTGCATGCCCAAGTCGTCA 233
Query 190 AAACTGGtttttttGTTGATGTGTTCACGGCGACGGCTTTGGTGAGTATGTATATGAAGG 249
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 234 AAACTGGGTTTTTCGTTGATGTGTTCACGGCAACGGCTTTGGTGAGTATGTATATGAAGG 293
Query 250 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGAGGTATTGCGA 309
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 TGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGAGAGGGGTATTGCGA 353
Query 310 GTGTTAATGCAGCGGTTTCGGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 369
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTGTTAATGCAGCGGTTTCTGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGA 413
Query 370 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTGGCTAGTGTTT 429
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 414 TGTTTGGGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTTGCTAGTGTTT 473
Query 430 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAAATGCATTGTTTGGCGATGAAATCAG 489
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 474 TGGGTGGTTGTGGGGATATTGAAGGAGGGATGCAATTGCATTGTTTGGCGATGAAATCAG 533
Query 490 GTTTTGAGATGGAAGTTTACGTTGGAACTTCTCTTGTTTCAATGTATTCGAGATGTGGAG 549
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 534 GTTTTGAGATGGAAGTTTACGTTGGAACCTCTCTTGTTTCAATGTATTCGAGATGTGGAG 593
Query 550 AGTGGATTTTGGCTGCGAGAATGTTCGAAAAAGTGCCTCATAAGAGTGTTGTGACCTACA 609
||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 594 AGTGGGTTTTGGCTGCGAGAATGTTCGAAAAGGTTCCTCATAAGAGTGTTGTTACCTACA 653
Query 610 ATGCTTTTATCTCCGGATTGATGGAGAATGGAGTTATGCATTTGGTCCCTAATGTCTTCA 669
||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct 654 ATGCTTTTATCTCTGGATTGATGGAGAATGGAGTTATGAATTTGGTTCCTAGTGTTTTCA 713
Query 670 ATCTCATGAGGAAGTTTTCAAGTGAAGAGCCAAATGATGTTACTTTTGTTAATGCAATAA 729
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 ATCTCATGAGGAAGTTTTCAAGTGAAGAACCAAATGATGTTACTTTTGTTAATGCAATAA 773
Query 730 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCATGGTCTTGTCATGA 833
Query 790 AAACAGAGTTTCAGTTTGATACAATGGTTGGTACAGCTCTCATTGATATGTATTCAAAAT 849
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 834 AAAAAGAGTTTCAGTTTGAGACAATGGTTGGTACTGCTCTCATTGATATGTATTCGAAAT 893
Query 850 GTCGATGTTGGAAATCAGCATACAGTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 909
|||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 894 GTCGGTGTTGGAAATCAGCTTACATTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGA 953
Query 910 TATCTTGGAACTCTGTTATCTCTGGGATGATGCTTAATGGACAGCATGAGACAGCAGTTG 969
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 954 TATCTTGGAACTCTGTTATCTCTGGAATGATGATTAATGGACAGCATGAGACAGCAGTTG 1013
Query 970 AGCTGTTTGAACAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCGC 1029
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 AGTTGTTTGAAAAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGCGACGTGGAATTCAC 1073
Query 1030 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAGTTGAAGCTTTCAAGTTCTTTGAGAGAA 1089
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1074 TGATCAGTGGCTTTTCACAATTAGGGAAAGTAATTGAAGCTTTCAAGTTCTTTGAGAGAA 1133
Query 1090 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCGGCTTGTT 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1134 TGCTATCAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCTGCTTGTT 1193
Query 1150 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CAGATATTTGGACTTTGAAGAACGGCAAAGAGATCCATGGGCATGTCATTAAAGCTGCAG 1253
Query 1210 CTGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGTTCT 1269
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1254 CGGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACATGAAATGTGGGCTCT 1313
Query 1270 CGTTGTTGGCACGCCGGATATTTGATCGGTTTGAGCCGAAACCCAAGGATCCCGTGTTCT 1329
| | || |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1314 CCTCGTGGGCACGCCGGATCTTTGATCGATTTGAACCGAAACCCAAGGATCCCGTGTTCT 1373
Query 1330 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAATCTGCAATTGAAATCT 1389
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1374 GGAACGTTATGATATCTGGATATGGTAAACATGGAGAGTGTGAGTCTGCAATTGAAATAT 1433
Query 1390 TCGACCTATTACGAGAGGAGGAAGTAGAACCGAGTTTAGCAACCTTCACTGCTGTTCTAT 1449
|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1434 TCGAACTATTACGAGAGGAGAAAGTAGAACCGAGTTTAGCAACCTTTACTGCTGTTCTAT 1493
Query 1450 CTGCGTGTAGTCACTGCGGCAATGTCGAGAAGGGATCTCAAATATTTAGGTTGATGCAGG 1509
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1494 CTGCGTGTAGTCACTGTGGCAATGTCGAGAAGGGTTCTCAAATATTTAGGTTGATGCAGG 1553
Query 1510 AAGAATATGGATATAAACCTAGTACAGAGCACATTGGTTGTATGGTTGATCTTTTGGGTC 1569
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1554 AAGAATATGGATATAAACCTAGTACAGAGCACATAGGTTGTATGATTGATCTTTTGGGTC 1613
Query 1570 GGTTTGGCAGATTAAGAGAAGCCAAGGAGGTAATAGATCAAATGTCAGATCCATCATCTT 1629
||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1614 GGTCTGGGAGATTAAGAGAGGCCAAGGAGGTAATAGATCAAATGTCAGAACCATCGTCTT 1673
Query 1630 CGGTTTACTCTTCTTTGCTCGGTTCATGTAGGCAACACCTGGATCCAGTGCTTGGAGAGG 1689
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1674 CGGTTTACTCTTCCTTGCTCGGTTCATGTAGGCAACACCTAGATCCAGTTCTTGGAGAGG 1733
Query 1690 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGGGAATCCAGCTCCATTTGTGATCTTGT 1749
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1734 AAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGAGAATCCAGCTCCATTTGTGATCTTGT 1793
Query 1750 CCAGCATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CCAGTATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAG 1853
Query 1810 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCTGAGT 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1854 ATCAGAAGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCCGACT 1913
Query 1870 GGTCCAAT 1877
|||| |||
Sbjct 1914 GGTCGAAT 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93021609885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5