BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936022
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13520.1 | Symbols: SMAP1 | small acidic protein 1 | chr4:78... 248 2e-65
> AT4G13520.1 | Symbols: SMAP1 | small acidic protein 1 | chr4:7864394-7864924
FORWARD LENGTH=531
Length=531
Score = 248 bits (134), Expect = 2e-65
Identities = 193/221 (87%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 12 GAAGAGAAG-AATGAGGCCGATGCAGCTTGACATGTTATCGGAGATGGATGATGCAGGTT 70
|||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 59 GAAGAG-AGAAATGAGGCCGATGCAGCTGGATATGTTATCGGAGATGGATGATGCAGGTT 117
Query 71 CTTCAATGGCCATGGACGTTGATGATCTCGAAGCTATGGAGATTTTTAGCGAAGGAGGAG 130
|||| |||||||||||||||||||| |||||||| |||||||| | | ||||||||||
Sbjct 118 CTTCGATGGCCATGGACGTTGATGACCTCGAAGCCATGGAGATACTCAACGAAGGAGGAC 177
Query 131 GTG-CTTCAGAGAGTAAGCTCGCCGACGCTGATTTCTTCAACAAATTCGAGGATGATTTC 189
|| || |||| | |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 178 TTGTCT-CAGATAACAAGCTCGCCGACGCCGATTTCTTCAACAAATTCGATGATGATTTC 236
Query 190 GACGATGCCGATATCAACTGATTCCGGTTAAAATTTCTTCT 230
|| || |||||||||||| | ||||||||| |||| |||
Sbjct 237 GATGACACCGATATCAACTAAATCCGGTTAAG-TTTCCTCT 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10355156294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5