BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936024

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770...   536    7e-152


> AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770121-13771712 
REVERSE LENGTH=1230
Length=1230

 Score =  536 bits (290),  Expect = 7e-152
 Identities = 369/407 (91%), Gaps = 6/407 (1%)
 Strand=Plus/Plus

Query  46   ATGTGGACTT-GGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT  104
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  ATGTGGA-TTGGGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT  363

Query  105  GGTGGTACTATTAGCGCCGCCGCTAAATTGAACCGTCAAGAAGCAGATATTGCTATCAAT  164
            |||||| |||||||||||||||| |||||||||||||||||||| |||||||| || || 
Sbjct  364  GGTGGTTCTATTAGCGCCGCCGCGAAATTGAACCGTCAAGAAGCCGATATTGCCATAAAC  423

Query  165  TGGGCCGGTGGGATGCAAAATGCGAAGAAAGATAAGGCTTCTGACTTTGGCTATGCCAAT  224
            ||||||||||| |||||  ||| |||||||||||| ||||||| |||||| |||| ||||
Sbjct  424  TGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAGCTTCTGGCTTTGGTTATGTCAAT  483

Query  225  GACGTTGTGCTTGGGATTCTCGAGTTGCTCAAAA-CTTTCAAGAGAGTTCTCTACGTAGA  283
            ||||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||||
Sbjct  484  GACGTTGTGCTTGCGATTCTCGAGTTACT-AAAATCTTTCAAGAGAGTTCTCTACATAGA  542

Query  284  TATTGGCTTTCGTCATGGGGATGGAGTGGAAGAAGCATTTAAGGACACTGATAGAGTTAT  343
             ||||| |||| |||||| |||| ||||||||||||||||||||| ||||||||||| ||
Sbjct  543  AATTGGTTTTCCTCATGGTGATGAAGTGGAAGAAGCATTTAAGGATACTGATAGAGTAAT  602

Query  344  GACTGTTTATTTCCACAAAATTGGGGACTCCGGAGACATAAGTGACTTTGGGGAAGG-AA  402
            |||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||
Sbjct  603  GACTGTTTCTTTCCACAAAGTTGGGGACACCGGAGACATAAGTGACTATGGGGAAGGGAA  662

Query  403  GAGGACAATATTATTCACTAAATGCACCATTGAAGGATGGTTTAGAT  449
             ||||||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct  663  -AGGACAATACTATTCACTCAATGCACCATTAAAGGATGGTTTGGAT  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5