BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936029
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-... 89.8 3e-17
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 86.1 4e-16
AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family... 71.3 1e-11
AT2G16220.1 | Symbols: | F-box and associated interaction doma... 54.7 1e-06
> AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-19984637
FORWARD LENGTH=1227
Length=1227
Score = 89.8 bits (48), Expect = 3e-17
Identities = 101/125 (81%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 123 AGTACCAAGTTATGACACTAGGGATTGGAAA-ACTTTCTTGGAG-AATGATTGAATGTTG 180
|||| |||||| ||||| ||||| ||||||| | |||| ||||| ||| | | |||||||
Sbjct 623 AGTATCAAGTTCTGACATTAGGGTTTGGAAATA-TTTCATGGAGAAAT-ACTCAATGTTG 680
Query 181 CAAAGCGCATTATC--CTT-TATATGA-TGGGATATGCATCAATGGTGTTTTGTATTATC 236
| || ||||||| ||| | || | ||| ||||||||||||||||||||||||||||
Sbjct 681 CGTAGTTCATTATCTACTTGAAGAT-AGTGGTATATGCATCAATGGTGTTTTGTATTATC 739
Query 237 GAGCT 241
||||
Sbjct 740 CAGCT 744
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 86.1 bits (46), Expect = 4e-16
Identities = 153/202 (76%), Gaps = 17/202 (8%)
Strand=Plus/Plus
Query 49 AAGCTATTTCGGGTTTGATCCTATCGACAAACATTTCAAGGTATTATGC-TTGGGAT-TA 106
|||| |||| |||| ||||||||| || ||||| ||||||||||| | | | | || ||
Sbjct 510 AAGCCATTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATTGT-CAAT-GAATATA 567
Query 107 GGTGTTATAG--TAGAAA-AGTACCAAGTTATGACACTAGGGATTGGA-AAACTTTCTTG 162
|||| | | || ||| || | | ||| ||||| |||| | | || || || |||||
Sbjct 568 GGTGATGGGGTCTATAAAGAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTG 626
Query 163 GAGAATGATTGAATGTTGC-AAAGCGCAT-TATCCT--TTATATGATGGGATATGCATCA 218
||||| ||| ||||||| | | | | ||| | || | || || | |||||||||||||
Sbjct 627 GAGAAGGATCGAATGTT-CTATACCCCATGT-TCATGGTTCTA--AAGGGATATGCATCA 682
Query 219 ATGGTGTTTTGTATTATCGAGC 240
||||||||||||||||||||||
Sbjct 683 ATGGTGTTTTGTATTATCGAGC 704
> AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family
protein | chr1:7161890-7163076 REVERSE LENGTH=1187
Length=1187
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 194 CCTTTATATGATGGGATATGCATCAATGGTGTTTTGTATTA 234
||| |||||||||||||||||||||||||||||||||||||
Sbjct 663 CCTCTATATGATGGGATATGCATCAATGGTGTTTTGTATTA 703
> AT2G16220.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7030155-7031378 REVERSE LENGTH=1224
Length=1224
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 206 GGGATATGCATCAATGGTGTTTTGTATTA 234
|||||||||||||||||||||||||||||
Sbjct 607 GGGATATGCATCAATGGTGTTTTGTATTA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5