BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936038

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20320.1 | Symbols:  | CTP synthase family protein | chr4:10...   676    0.0  


> AT4G20320.1 | Symbols:  | CTP synthase family protein | chr4:10974579-10979464 
FORWARD LENGTH=2347
Length=2347

 Score =  676 bits (366),  Expect = 0.0
 Identities = 418/444 (94%), Gaps = 0/444 (0%)
 Strand=Plus/Plus

Query  52    TCTTGCACGCTTCTGTGGCTAGGTGCAAGAAACTTGTCATAGATTGGATTTCAGCTAGTG  111
             ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  1046  TCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCAGCTAGTG  1105

Query  112   ATCTTGAGCAAGGTGTaaaaaaaGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC  171
             ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1106  ATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC  1165

Query  172   TCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTAGAAGGAA  231
             ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||
Sbjct  1166  TCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTAGAAGGAA  1225

Query  232   AGATGTTGGCAGCAAAATACGCTAGAGAAAACAGAGTTCCATACCTCGGTATCTGTCTAG  291
             ||||| ||||||| |||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct  1226  AGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATCTGTCTAG  1285

Query  292   GGATGCAGCTTGCTGTGATCGAGTTTGCAAGAACCGTACTCGGTTTGCCAGATGCAAATA  351
             | ||||| || ||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct  1286  GTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGATGCAAATA  1345

Query  352   GCACTGAACTTGATCCCAACACCAAGAACCCTTGTGTTATTTTCATGCCTGAGGGGTCTA  411
             ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct  1346  GCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAGGGGTCGA  1405

Query  412   AAACGCATATGGGAGGCACTATGAGATTAGGCTCAAGAAGAACTTATTTTCAAGCTAAGG  471
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||
Sbjct  1406  AAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCATTCTAAGG  1465

Query  472   ACTCCAAATCAGCAAAACTGTATG  495
             ||||||||||||||| ||| ||||
Sbjct  1466  ACTCCAAATCAGCAAGACTATATG  1489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5