BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936040
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13700.1 | Symbols: ATPAP23, PAP23 | purple acid phosphatase... 870 0.0
> AT4G13700.1 | Symbols: ATPAP23, PAP23 | purple acid phosphatase
23 | chr4:7957072-7958919 REVERSE LENGTH=1377
Length=1377
Score = 870 bits (471), Expect = 0.0
Identities = 644/723 (89%), Gaps = 29/723 (4%)
Strand=Plus/Plus
Query 42 GGTCTTACTAGTAACACAACAACCACCATTGACCATTTGATGGAAAATGA-CCCTTCACT 100
|||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 586 GGTCTTACTAGTAATACTACAACCACCATTGACCATTTGATGGAAAACGATCCC-TCATT 644
Query 101 GGTTTTAATTGTTGGGGACATGACATATGCAAACCAGTACCGTACAACTGGTGGCAAAGG 160
|||| |||||||||||||| | || |||||||||||||| ||||| | |||||| |||||
Sbjct 645 GGTTATAATTGTTGGGGACTTAACTTATGCAAACCAGTATCGTACTATTGGTGGTAAAGG 704
Query 161 AGTTTCATGCTTCTCATGTTCGTTTCCAGATGCACCGATTAGAGAGACGTATCAACCTCG 220
|||| |||||||||||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct 705 AGTTCCATGCTTCTCATGTTCGTTTCCTGATGCACCTATAAGGGAGACTTATCAACCTCG 764
Query 221 TTGGGATGCCTGGGGAAGGTTCATGGAGCCATTGACCTCAAAGGTCCCAACAATGGTAAT 280
|||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 765 CTGGGATGCTTGGGGAAGGTTCATGGAGCCATTGACTTCCAAGGTCCCAACGATGGTCAT 824
Query 281 TGAAGGCAACCATGAGATTGAGCCTCAAGCTTCCGGGATCACCTTTAAGTCATATTCAGA 340
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 825 TGAAGGCAACCATGAGATTGAGCCTCAAGCTTCAGGGATCACCTTTAAGTCATATTCTGA 884
Query 341 AAGGTTTGCAGTTCCTTCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGA 400
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AAGGTTTGCTGTTCCTGCAAGTGAGAGTGGCTCCAACAGCAACTTCTACTATTCTTTTGA 944
Query 401 TGTCGGAGGAGTGCATTTTGTTATGTTGGGAGCGCA-GT--ATG-CA-T------GG-CT 448
|| ||||||||||||||||||||||||||| || | || || || | || ||
Sbjct 945 TGCCGGAGGAGTGCATTTTGTTATGTTGGGTGCATATGTTGATTACAATAACACTGGGCT 1004
Query 449 --AA-A-G---G---AA-G-A---CTTGTCTAAAGTTGATCGCACAGTGACACCTTGGCT 493
|| | | | || | | ||||||||||||||||||| | |||||||| |||||
Sbjct 1005 GCAATATGCATGGCTAAAGGAAGACTTGTCTAAAGTTGATCGCGCTGTGACACCATGGCT 1064
Query 494 GGTTGCAACGATGCATCCGCCTTGGTATAACAGCTACTCCTCGCACTACCAAGAGTTTGA 553
||||||||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1065 GGTTGCAACTATGCATCCACCTTGGTACAACAGCTACTCCTCGCATTACCAGGAGTTTGA 1124
Query 554 ATGCATGAGGCAGGAGATGGAAGAGCTTCTTTACCAACACCGTGTCGACCTTGTGTTTGC 613
||||||||||||||| ||||||||||||||||||||| ||||||| ||| | || |||||
Sbjct 1125 ATGCATGAGGCAGGAAATGGAAGAGCTTCTTTACCAATACCGTGTTGACATAGTTTTTGC 1184
Query 614 AGGACATGTACATGCATACGAGAGGATGAACCGCATATACAACTACACACTAGACCCATG 673
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGACATGTACATGCATACGAGAGAATGAACCGCATATACAACTACACACTAGACCCATG 1244
Query 674 TGGGCCAGTTTACATAACAATAGGAGACGGTGGAAACATTGAGAAAGTTGATGTGGACTT 733
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1245 TGGACCAGTTTACATAACAATAGGAGATGGTGGAAACATTGAGAAAGTTGATGTGGACTT 1304
Query 734 TGC 736
|||
Sbjct 1305 TGC 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5