BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936051
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36940.1 | Symbols: NAPRT1 | nicotinate phosphoribosyltransf... 359 1e-98
> AT4G36940.1 | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase
1 | chr4:17416855-17420252 FORWARD LENGTH=2132
Length=2132
Score = 359 bits (194), Expect = 1e-98
Identities = 235/254 (93%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 14 TTTGACTGATGAAGAGATCGATTTCGTTCGCGATTCGTTGCCTCGATGTGAGGAAGCTTT 73
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 332 TTTGACTGATGAAGAGATCGATTTCGTTCGTGATTCGTTACCTGGATGTGAGGAAGCTTT 391
Query 74 CTGTGATTATCTTCGAAGACTTGATTATTCTGACATTGAAGTGTATGCCATTTCAGAAGG 133
|||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 392 CTGTGATTATCTTCGAGGGCTTGATTGTTCTGACATTGAAGTGTATGCCATTTCGGAAGG 451
Query 134 ATCAGtt-tttttCCCTTGAAGTTCCTTTACTCAGAATTGAAGGTCATGTTG-TGT--TG 189
||||||| ||||||| | ||||||||||||||||||| ||||||| ||||| ||| ||
Sbjct 452 ATCAGTTGTTTTTCC-TA-AAGTTCCTTTACTCAGAATCGAAGGTCCTGTTGCTGTGGTG 509
Query 190 CAATTGTTGGAAACTCCATTGCTTAATCTCATCAATTACGCATCTTTGATTGCTACAAAT 249
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 510 CAATTGTTGGAAACTCCATTCCTCAATCTCATCAATTACGCATCTTTGGTTGCTACAAAT 569
Query 250 GCAGCAAGACATCG 263
||||||||||||||
Sbjct 570 GCAGCAAGACATCG 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15482466692
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5