BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936061
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02880.1 | Symbols: | mucin-related | chr2:841246-843429 FO... 1454 0.0
> AT2G02880.1 | Symbols: | mucin-related | chr2:841246-843429
FORWARD LENGTH=1280
Length=1280
Score = 1454 bits (787), Expect = 0.0
Identities = 919/980 (94%), Gaps = 20/980 (2%)
Strand=Plus/Plus
Query 3 ACCACTCTCACTGAGAAGATGAATTCACTTCATCGTGTAATAGGATTGATCACCAGAACA 62
|||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 40 ACCACTCTCACTGAGAAGATGAATTCTCTTCATCGTGTAGTAGGATTGATCAGCAGAACG 99
Query 63 ACCCCGAATCCAATTTCTTCAAGAATTTCGCATACCCGTTTAAATCTCCCATCGATTCTC 122
| ||| | | | || || |||||| ||||||||||| ||||||||||||||||||
Sbjct 100 A---CGACTAC-A--TC-TC--CAATTTCTCATACCCGTTTCAATCTCCCATCGATTCTC 150
Query 123 GTCAATTTGATGTCCACAAAATCTGGAAACGATGAAGACAAATGGAACGACGCTTGGGAA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 GTCAATTTGATGTCCACAAAATCTGGAAACGATGAAGACAAATGGAACGACGCTTGGGAA 210
Query 183 TCAGCTTGGTTACCAGATGATCTCACAGATAAAATACGAGCTCCATGGGAGACAGATGTG 242
||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 211 TCAGCTTGGTTACCAGATGATCTCACAGATAAAATCCGAGCACCATGGGAGAGAGATGTG 270
Query 243 AACTTCTCTGTAAAAGAATCAACGGCCACGAC--T-GAAGAAATCGATGTGGAAGCAAAA 299
|||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||
Sbjct 271 AACTTCCCTGTAAAAGAATCAACGGCGACGGCGATTGAAGAAATCGATGTGGAAGCAAAA 330
Query 300 GCGTTCGTAGAAGATATGAATGAGCATTGGAACgagaggagagggaagagtgggaaagtg 359
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 331 GCGTTCGTAGAGGATATGAATGAGCATTGGGACGAGAGGAGAGGGAAGAGTGGGAAAGTG 390
Query 360 gagaagagagaagagaagaagaagaaagagattggagatggagaaga--a-TCATCATCA 416
||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||
Sbjct 391 GAGAAGAGAGAAGAGAAGAAGAA-A--GAGATTGGAGATGGAGAAGATGAATCATCATCA 447
Query 417 TCGCTTTATAGTTTGGAAACGATGAAGAAAGATTATAGATTGAAGAAACAAAGAGTTCAT 476
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 448 TCGCTTTATAGTTTGGAGACGATGAAGAAGGATTATAGGTTGAAGAAACAAAGAGTTCAT 507
Query 477 GCTTCTTTGTGGGTTAAAGAGATTGAGAAATTGGAAGAAGCTAAATTAGG-TGATTCTGG 535
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 508 GCTTCTCTGTGGGTTAAAGAGATTGAGAAATTGGAAGAAGCTAAATT-GGATGATTCTGG 566
Query 536 ATCTGGTGGTGGAGCTGATGATATTGATAGGCTTCTTGATAGTTGCTCAGAGATTTTCGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATCTGGTGGTGGAGCTGATGATATTGATAGGCTTCTTGATAGTTGCTCAGAGATTTTCGA 626
Query 596 CTCGGTAGACCATGATTTCGACAAATTGGAGGTTTCGAGTGGATCTGAACTGAAGAACAA 655
||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 627 TTCGGTAGACCATGATTTTGACAAATTAGAGGTTTCGAGTGGATCTGAATTGAAGAATAA 686
Query 656 GCCTGATGGTTGGGAATCAACAGCAAAGGAACAAGATGGAAATCTCTGGGAGATGTCGCA 715
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 687 GCCTGATGGTTGGGAATCAACAGCAAAGGAACAAGATGGAAACCTCTGGGAGATGTCACA 746
Query 716 AAGAGAAGAAGACATTCTTCTCCAAGAATTTGATCGCCGTACTGCCTTCTGCAAATTTCA 775
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 747 AAGAGAAGAAGACATTCTTCTCCAAGAATTTGATCGTCGCACTGCCTTCTGCAAATTTCA 806
Query 776 GATAGCGAGTTTTATAAAGCAACACATATTCAGTAGGAGAAGACCGATTGATGGGTGGAG 835
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GATAGCTAGTTTTATAAAGCAACACATATTCAGTAGGAGAAGACCGATTGATGGGTGGAA 866
Query 836 ATACATGATAGAAGTGATTGGTCCAAATGCGAGGAAAGGGAAAGGAAGTGTTTCTAGGCT 895
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 ATACATGATTGAAGTGATTGGTCCAAATGCGAGGAAAGGGAAAGGAAGTGTTTCTAGGCT 926
Query 896 CCCGGCTTTATCGGATGTGTCGACTCAGCCCTTCAAAGAAGAAACTGGGAGCCTCACTAC 955
|||||||||||||||||||||||||||||| || ||||||||||| | || ||||||||
Sbjct 927 CCCGGCTTTATCGGATGTGTCGACTCAGCCGTTTAAAGAAGAAACCAGCAGTCTCACTAC 986
Query 956 TTTGAAGCGCCGGTAGAAGA 975
|||||||| ||||||||||
Sbjct 987 CTTGAAGCGTCGGTAGAAGA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5