BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936067
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 1236 0.0
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 933 0.0
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 867 0.0
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 693 0.0
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 407 1e-112
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 130 3e-29
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 78.7 1e-13
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 63.9 3e-09
AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-... 63.9 3e-09
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 1236 bits (669), Expect = 0.0
Identities = 901/1011 (89%), Gaps = 24/1011 (2%)
Strand=Plus/Plus
Query 80 GCTGAATTTCATGTGAAGTTCTCTCCAGA-AAATT--TGA-GGATCAATTATT-ATAGTG 134
||||||||||||||||||||||||||||| || || | | |||||| ||| || |
Sbjct 238 GCTGAATTTCATGTGAAGTTCTCTCCAGACAAGTTAAT-ACCAATCAATCATTCTTA-CG 295
Query 135 AGTTAAAG-TATTTTTCAATTGGCTACGCCTCTGGTTTGATCTATATCTATGGTAATCGA 193
| ||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 296 A-CCCAAGATATTTTTCAATTGGCTACGCCTCTGGCTTGATATATATCTATGGTGATCGA 354
Query 194 TACCAGGCTAGACCTGTCATATGTAACCCCAACACAGGACGGTATGCAATCTTACCTAAT 253
||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 355 TACGTGGCTAGACCTCTAATATGTAACCCCAACACAGGACGGTATGTGATCTTACCTAAT 414
Query 254 CGTTATACTTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATAC 313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CGGTATACTTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATAC 474
Query 314 AAGGCCTTGTCCATTATTTATCCAACTGGTCCTGGTCGTAATAAAATACTTACATTAGGA 373
||||| ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 475 AAGGCATTGTCCATTGCTTATCCATCTGATCCTGGTCGTCATAAAATACTTACATTAGGA 534
Query 374 GATGGAGATTTTGA-ATGGAGAAAGATCAAATTTCCCTTAGGACGACCTGAAATTAAGAG 432
||||||||| | || ||||||||||||||||| |||| || |||||||| |||||| |
Sbjct 535 GATGGAGATCT-GACATGGAGAAAGATCAAATGTCCCGTACCACGACCTGGTATTAAGGG 593
Query 433 TGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCTGAGAGTTATCAAGG-ATCGT 491
||||||||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 594 TGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCTGAGAGAAATGA-GCTAGAGT 652
Query 492 TTGAATATGTGATAGTTTGCTTTGACGTTCGGTATGAGACATTCACCTATATTGACGTAG 551
||| |||||||||||||||||||| ||| ||| ||||| |||||| |||||||||||||
Sbjct 653 CTGATTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACATATATTGACGTAG 712
Query 552 AAAAGTTTTGTCGATTAATAAACTACAAGGGCAAATTAGCTATGATTTATTGGGAGGATG 611
| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGAGGATTTGTCGATTGATAAACTACAAGGGCAAATTAGCTATGATTTATTGGGAGGATG 772
Query 612 ATGTCGACATTTATGCCATGTG-TAATATTCC-G--AAGGATCTCGATGAGTATTTGGAG 667
||||||||||||||| || | | |||| | | ||| |||| ||| |||||||||||
Sbjct 773 ATGTCGACATTTATGAGAT-TAATCATATGGCTGGGAAGAATCTTGATAAGTATTTGGAG 831
Query 668 GAAAATCTCGACGTTGATGCCACTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAG 727
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 832 GAAAATCTCGATGTTGATGCCACTAATGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAG 891
Query 728 AAACAGAAATGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCAC 787
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AAACAGGAATGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCAC 951
Query 788 CTTTCCATCGCTGGAGCCACTGCTTCAGGTGAAATAGTGTTTTCCATGCGCAAGTATACA 847
|||||||| ||||||||||||| ||| ||||||||||||||||| || |||||||| |||
Sbjct 952 CTTTCCATTGCTGGAGCCACTGTTTCGGGTGAAATAGTGTTTTCGATACGCAAGTACACA 1011
Query 848 TGTAAACAACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTT 907
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 TCTAAACAACCGTTTTATGTTTTCTACTTCAATCCCGAATCGAACACTCTCCAACGTGTA 1071
Query 908 GAAATCCAAGGTTTTGGCGAAGCGTTTAAG--A-AAACTTGTAGCGTTCGCACGTTTGTA 964
|||| |||||||||||| ||||| |||||| | ||||||||||||||||||| ||||||
Sbjct 1072 GAAACCCAAGGTTTTGGTGAAGCATTTAAGGCAGAAACTTGTAGCGTTCGCACCTTTGTA 1131
Query 965 AACCACATAGAGGATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCA 1024
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1132 AACCACGTAGAGAATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGGCCATCCTCCA 1191
Query 1025 TTGA---AGCCAGAATTTTATTGTCTACCAGAAGCAGATACAGAATCAGAC 1072
||| |||||||| |||||||||| |||| ||||| |||||||||||
Sbjct 1192 TTGGTGCAGCCAGAAAATTATTGTCTATCAGACTCAGATTCAGAATCAGAC 1242
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 933 bits (505), Expect = 0.0
Identities = 833/984 (85%), Gaps = 51/984 (5%)
Strand=Plus/Plus
Query 80 GCTGAATTTCATGTGAAGTTCTCTCCAGA-AA-ATTTGAGGATCAATTATT-ATAGTGAG 136
|||||||||||||| |||||||||||||| || | | | ||| | ||| || |||
Sbjct 416 GCTGAATTTCATGTTAAGTTCTCTCCAGACAAGCTAT-A-TATCTGTCATTGTTA-TGAC 472
Query 137 TTAAAGTATTTTTCAATTGGCTACGCCTCTGGTTTGATCTATATCTATGGTAATCGATAC 196
|||| ||||||||||||||||||||||| || ||||||||| | |||||| ||||| |
Sbjct 473 CTAAAATATTTTTCAATTGGCTACGCCTCGGGGTTGATCTATTTATATGGTGATCGAGGC 532
Query 197 CAGGCTAGACCTGTCATATGTAACCCCAAC-ACAGGACGGTATGCAATCTTACCTAATCG 255
|||||| |||| | |||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 533 GAGGCTACACCTCTAATATGTAACCCC-ACTACAGGACGGTATGCCATCTTACCTAATCG 591
Query 256 TTATACTTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAA 315
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 592 GTATACTTACAGAAAGGCGTATAGCTTTTTCGGATTTGACCCGATTGACAAGCAATACAA 651
Query 316 GGCCTTGTCCATTA-TTTATCCAACTGGTCCTGGTCGTAATAAAATACTTACATTAGGAG 374
||| ||||||| || |||||||| |||||||||||| || |||||| |||||||| || |
Sbjct 652 GGCATTGTCCA-TATTTTATCCATCTGGTCCTGGTCATAGTAAAATTCTTACATTTGGGG 710
Query 375 ATGGAGATTTTGAA-TGGAGAAAGATCAAATT-TCCCTTA-G----GA-CGACCTGAAAT 426
|||| | | |||| ||||||||||| ||||| ||||||| | || ||| ||| ||
Sbjct 711 CTGGACA-TATGAAGTGGAGAAAGAT-AAATTGTCCCTTACGATATGATAGACATGATAT 768
Query 427 TAAGAGTGATGGGATATGCATCAATGGGGTTTTGTATTTC-T---TAG--C-T--GA--G 475
||||||||| ||||||||||||||||| |||||||||| | | ||| | | || |
Sbjct 769 TAAGAGTGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGTAGCACGTCGGATTG 828
Query 476 AGTT----A---TCAAGG-ATCGT-T-TGAATATGTGATAGTTTGCTTTGACGTTCGGTA 525
||| | ||| || || || | ||| |||||||||||||||||||| || |||
Sbjct 829 TGTTAAGGATGGTCATGGCATAGTATCTGATTATGTGATAGTTTGCTTTGATATTAGGTC 888
Query 526 TGAGACATTCACCTATATTGACGTAGAAAAGTTTTGTCGATTAATAAACTACAAGGGCAA 585
||||| |||||| | |||||||||||||| |||||||||||| || ||||| ||||| ||
Sbjct 889 TGAGAAATTCACGTTTATTGACGTAGAAAGGTTTTGTCGATTGATCAACTATAAGGGAAA 948
Query 586 ATTAGCTATGATTTATTGGGAGGATGATGTCGACATTTATGCCATG-TGTAATATTCCGA 644
||||||| |||||||||||||||||||||||||||||||| | | | || |||| |
Sbjct 949 ATTAGCTGTGATTTATTGGGAGGATGATGTCGACATTTAT---AAGCTTTATTATT-C-- 1002
Query 645 AGGATCTCGATGAGTATTTGGAGGAAAATCTCGACGTTGATGCCACTAATGAGTTGCGTG 704
|||| |||| || ||| ||||| | ||| | ||| ||||| || ||||||||||||||
Sbjct 1003 -GGATGTCGACGAATATGTGGAGTATAATATTAACGATGATGACATTAATGAGTTGCGTG 1061
Query 705 TGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGGTCTAAATATGCCTACACTTGGACCG 764
|||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 1062 TGTGGGTTCTAGAGGATGTTAAGAAACAGCAATGGTCGAAATATGCCTACACTTGGACCG 1121
Query 765 ATGATACATTCTTCCGTCGTCACCTTTCCATCGCTGGAGCCACTGCTTCAGGTGAAATAG 824
|||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct 1122 ATGATAGATTCTTCCGTCGTCGTGTTTCCATCGCTGGAGGGACTGCTTCGGGTGAAATAG 1181
Query 825 TGTTTTCCATGCGCAAGTATACATGTAAACAACCGTTTTATGTTTTCTACTTCAATCCCG 884
||||||| |||| ||| |||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1182 TGTTTTCGATGCTCAAATATACACCTAAGCAACCGTTTTATGTTTTCTACTTCAATCCCG 1241
Query 885 AAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGCGAAGCGTTTAAGAAAACTT 944
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 1242 AAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAGTGTTAAAGAAAACTT 1301
Query 945 GTAGCGTTCGCACGTTTGTAAACCACATAGAGGATCTTGATGTTAACGA-TTTAAAACAA 1003
|||| ||| |||| |||||||||||| ||||||||||| ||||| |||| |||||| |||
Sbjct 1302 GTAGAGTTTGCACCTTTGTAAACCACGTAGAGGATCTTAATGTTCACGACTTTAAA-CAA 1360
Query 1004 CTCAAGTCAGTCCATCCTCCATTG 1027
||||||||||||||||| ||||||
Sbjct 1361 CTCAAGTCAGTCCATCCCCCATTG 1384
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 867 bits (469), Expect = 0.0
Identities = 840/1009 (83%), Gaps = 65/1009 (6%)
Strand=Plus/Plus
Query 80 GCTGAATTTCATGTGAAG-TTCTCTCCAGAAAATTTGA-GGATCAATTATTA-TAGTGAG 136
||||||||||||||| || ||||||||||| ||| | | |||| | |||| || |||
Sbjct 283 GCTGAATTTCATGTG-AGATTCTCTCCAGACAATCT-ACTGATCTGTCATTATTA-TGAC 339
Query 137 TTAAAGTATTTTTCAATTGGCTACGCCTCTGGTTTGATCTATATCTATGGTAATCGATAC 196
|||| |||||||||||||| || |||| ||| |||||||||||||||||||||||| |
Sbjct 340 CTAAAATATTTTTCAATTGGTTATGCCTTTGGCTTGATCTATATCTATGGTAATCGAGGC 399
Query 197 CAGGCTAGACCTGTCATATGTAACCCCAAC-ACAGGACGGTATGCAATCTTACCTAATCG 255
| |||||||||| | |||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 400 CGGGCTAGACCTCTAATATGTAACCCC-ACTACAGGACGGTATGCCATCTTACCTAATCG 458
Query 256 TTATACTTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAA 315
||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 459 GTATACTTACAGAAAGGCGTTTAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAA 518
Query 316 GGCCTTGTCCATTATTTATCCAACTGGTCCTGGTCGTAATA-AAATACTTACATTAGGAG 374
||| |||||||| |||||||| |||||||||||| || || | || ||||||| ||||
Sbjct 519 GGCATTGTCCATGGTTTATCCATCTGGTCCTGGTCATAGTAGAGTTA-TTACATTTGGAG 577
Query 375 ATGGAGATTTTGAA-TGGAGAAAGATCAAAT-TTCCCTTAGGACGACCTGAAATTAAGAG 432
|||||| | |||| ||||||| ||| |||| || | || | |||| ||| ||||||||
Sbjct 578 CTGGAGA-TCTGAAGTGGAGAAGGATAAAATGTT-CATT--G-CGACATGATATTAAGAG 632
Query 433 TGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCTG--A-G--AG-TT--A-T-- 481
||| ||| |||| ||||||||||||||||||| ||||| || | | | || | |
Sbjct 633 TGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAGGTGACACGTCGGATTGGAGTCG 692
Query 482 C---AA-GG--AT--CGT----T-TGAATATGTGATAGTTTGCTTTGACGTTCGGTATGA 528
| || || || ||| | || ||| |||||||||||||||| ||| ||| |||
Sbjct 693 CGTTAATGGTAATCACGTAACGTCTGGTTATATGATAGTTTGCTTTGATGTTAGGTCTGA 752
Query 529 GACATTCACCTATATTGACGTAGAAAA-GTTTTGTCGATTAATAAACTACAAGGGCAAAT 587
| |||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 753 AAAATTCACCTTTATTGACGTA-AAAAGGTTTTGTCGATTGATAAACTACAAGGGCAAAT 811
Query 588 TAGCTATGATTTATTGGGAGGATGATGTCGACATT-TA-TGCCATGTGTA-ATATTCCG- 643
||||| ||||||||||||||||||||||||||||| | || | | || | | |
Sbjct 812 TAGCTGTGATTTATTGGGAGGATGATGTCGACATTCAAGAGCTTTAT-TACAAAAAGGGT 870
Query 644 A-AGGATCTCGATGAGTATTTGGAGGAA-AATCTCGACGTTGATGCCACTAATGAGTTGC 701
| | ||| |||| || ||| |||| ||| ||| || ||| |||||||||||||||||||
Sbjct 871 ATA-GATGTCGAGGAATATGTGGA-GAATAATGTCAACGCTGATGCCACTAATGAGTTGT 928
Query 702 GTGTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGGTCTAAATATGCCTACACTTGGA 761
|||||||| |||||| |||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 929 GTGTGTGGATTCTAGCGGATGTTGAGAAACAGGAATGGTCGAAACATGCCTACACTTGGA 988
Query 762 CCGATGATACA-TTCTTCCGTCGTCACCTTTCCATCGCTGGAGCCACTGCTTCAGGTGAA 820
||||||| | | |||||||||||| | ||||||||||||| |||||||| ||||||
Sbjct 989 CCGATGA-AAAGTTCTTCCGTCGTTTGGTATCCATCGCTGGAGTGACTGCTTCGGGTGAA 1047
Query 821 ATAGTGTTTTCCATGCGCAAGTATACAT-GTAAACAACCGTTTTATGT-TTTCTACTTCA 878
||||||||||| |||||||||| || || |||||||||||||||||| ||| |||||||
Sbjct 1048 ATAGTGTTTTCGATGCGCAAGTGTA-ATCCTAAACAACCGTTTTATGTGTTT-TACTTCA 1105
Query 879 ATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGCGAAG-CGTTTAAG 937
||||||||||||||| |||||||||||||||||| ||||||||||| |||| || ||| |
Sbjct 1106 ATCCCGAAAGGAACAGTCTCCAACGTGTTGAAATTCAAGGTTTTGGTGAAGCCG-TTACG 1164
Query 938 AAAACTTGTAG-CGTTCGCACGTTTGTAAACCACATAGAGGATCTTGATGTTAACGATTT 996
||| ||||| | |||| |||| |||||||||||| |||||||||| ||||| |||||||
Sbjct 1165 AAATCTTGT-GACGTTTGCACCTTTGTAAACCACGTAGAGGATCTCAATGTTTACGATTT 1223
Query 997 AAAACAACTCAAGTCAGTCCATCCTCCATTGA---AGCCAGAATTTTAT 1042
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1224 AAAACAACTCAAGTCAGTCCATCCTCCATTGGTCGAGCCAGAATATTAT 1272
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 693 bits (375), Expect = 0.0
Identities = 471/518 (91%), Gaps = 4/518 (1%)
Strand=Plus/Plus
Query 493 TGAATATGTGATAGTTTGCTTTGACGT-TCGGTATGAGACATTCACCTATATTGACGTAG 551
||| |||||||||||||||||||| || | || ||||| |||||||| | ||| ||||
Sbjct 1059 TGAGTATGTGATAGTTTGCTTTGATGTGAC-GTCTGAGAAATTCACCTTTGTTGGCGTAC 1117
Query 552 AAAAGTTTTGTCGATTAATAAACTACAAGGGCAAATTAGCTATGATTTATTGGGAGGATG 611
|||||||||||| ||| || |||||||||||||| |||| | |||| |||||||||||||
Sbjct 1118 AAAAGTTTTGTCTATTGATCAACTACAAGGGCAAGTTAGATGTGATCTATTGGGAGGATG 1177
Query 612 ATGTCGACATTTATGCCATGTG-TAATATTCCGAAGGATCTCGATGAGTATTTGGAGGAA 670
||||||||||| ||| || || || | || ||||||||||||||||||||||||| |||
Sbjct 1178 ATGTCGACATTCATGAGATTTGTTACT-TTGCGAAGGATCTCGATGAGTATTTGGACGAA 1236
Query 671 AATCTCGACGTTGATGCCACTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAA 730
||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 1237 AATCTTGACGCTGATGCCACTAACGAGTTGCATGTGTGGGTTCTAGAAGATGTTGAGAAA 1296
Query 731 CAGAAATGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTT 790
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1297 CAGGAATGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCATCGTCACCTT 1356
Query 791 TCCATCGCTGGAGCCACTGCTTCAGGTGAAATAGTGTTTTCCATGCGCAAGTATACATGT 850
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
Sbjct 1357 TCCATTGCTGGAGCCACTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTACACATCT 1416
Query 851 AAACAACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAA 910
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1417 AAACAACCATTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAA 1476
Query 911 ATCCAAGGTTTTGGCGAAGCGTTTAAGAAAACTTGTAGCGTTCGCACGTTTGTAAACCAC 970
|||||||||||||| |||||||||| || ||||||||| |||||||| ||||||||||||
Sbjct 1477 ATCCAAGGTTTTGGTGAAGCGTTTAGGACAACTTGTAGTGTTCGCACCTTTGTAAACCAC 1536
Query 971 ATAGAGGATCTTGATGTTAACGATTTAAAACAACTCAA 1008
||||||||||||||||||||||||||| ||||||||||
Sbjct 1537 ATAGAGGATCTTGATGTTAACGATTTAGAACAACTCAA 1574
Score = 309 bits (167), Expect = 4e-83
Identities = 280/333 (84%), Gaps = 13/333 (4%)
Strand=Plus/Plus
Query 80 GCTGAATTTCATGTGAAGTTCTCTCCAGAAAATTTGAGGATCAAT-TAT-TATAGTG-AG 136
||||||||||||||||||||||||||||| || | | | | || ||| | | || ||
Sbjct 700 GCTGAATTTCATGTGAAGTTCTCTCCAGACAA-GTCAATACCGATCTATCTGT-CTGAAG 757
Query 137 -TTAAAG-TATTTTTCAATTGGCTACGCCTCTGGTTTGATCTATATCTATGGTAATCGAT 194
||| ||| |||||||||||||||||||||| |||||||||| |||| || |||||
Sbjct 758 ACCCAAGATATGTTTCAATTGGCTACGCCTCTGGCTTGATCTATAACTATTGTGGTCGAT 817
Query 195 ACCAGGCTAGACCTGTCATATGTAACCCCAACACAGGACGGTATGCAATCTTACC-TAAT 253
|| || ||||||| | ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 818 ACGTGGGTAGACCTCTAATATGTAACCCCAACACAGGACGGTATGCGATCTTACCATA-T 876
Query 254 CGTTATACTTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATAC 313
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 877 CGTTATACTTATAGAAAGGCGTATAGTTTTTTCGGGTTTGACCCGATTGACAAGCAATAC 936
Query 314 AAGGCCTTGTCCATTATTTATCCA-ACTGGTCCTGGTCGTAATAAAATACTTACATTAGG 372
|||||||||||| || |||| | | |||||||||||||| |||| | |||||||| ||
Sbjct 937 AAGGCCTTGTCCCTTCCTTATGTAGA-TGGTCCTGGTCGTAGTAAAGTTCTTACATTTGG 995
Query 373 AGATGGAGATTTTGA-ATGGAGAAAGATCAAAT 404
|| ||||||| | || ||||||||| || ||||
Sbjct 996 AGCTGGAGATCT-GACATGGAGAAATATTAAAT 1027
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 407 bits (220), Expect = 1e-112
Identities = 753/993 (76%), Gaps = 106/993 (11%)
Strand=Plus/Plus
Query 84 AATTTCATGTGAAGTTCTCTCCAGAA-AATTTGAGGATCAATTATTATAGTGAGTTAAAG 142
||||||||||||||||| ||||| || ||| || | ||| | || ||||||| | | |
Sbjct 269 AATTTCATGTGAAGTTCCCTCCA-AACAATATGCGCATCGGTCATAATAGTGA-TCGACG 326
Query 143 -TATTTTTCAAT-TGGCTACGCCTCTGGTTTGATCTATATCTATGGT-AATCGATACC-A 198
|||||||| || ||| ||| ||||||||||||||||| | |||||| | ||| | || |
Sbjct 327 ATATTTTTC-ATATGGTTACACCTCTGGTTTGATCTATTTATATGGTGATTCG-T-CCGA 383
Query 199 GGCTAGACCTGTCATATGTAACCCCAACACAGGACG-GTATGCAATCTTACC-TAATCGT 256
| |||| |||| |||||||||||| |||||||| | ||||||||||||||| || | |
Sbjct 384 CGATAGATCTGTGATATGTAACCCCTACACAGGA-GAGTATGCAATCTTACCTTATTTG- 441
Query 257 TATAC-TTACAGAAAGGCGTATAGCTTTTTCGG-GTTTGACCCGATTG-GCAAGCAATAC 313
| || |||||||||| ||||||||||||| || |||||| ||||||| | ||||||| |
Sbjct 442 CA-ACGTTACAGAAAGACGTATAGCTTTTT-GGTGTTTGAACCGATTGAG-AAGCAATTC 498
Query 314 AAGGCCTTGTCCATTATTTATCCAACTGGTCCTGGTCG-TAATAAAATACTTACATTAGG 372
||| |||| ||| ||||| | ||||| | || | | ||||||| |||||| ||||
Sbjct 499 AAGATATTGTTCATGGCTTATCTATCTGGTGATCGT-GATCATAAAATCCTTACAGTAGG 557
Query 373 AGA-TGGAGATTTTGAA-TGGAGAAAGATCAA-AT-TTCCCTTAGGACGACCTGAAATTA 428
| | |||| | | |||| ||||||| || || || || |||| || || |||||||
Sbjct 558 A-ACTGGA-AATATGAAGTGGAGAACCAT-AAGATGTT-CCTT--GA-GATATGAAATTG 610
Query 429 AGAGTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTA-GCTG--A-G--AG-TT-- 479
|||||| ||| ||| ||| |||||||| ||||||| |||| || | | | | ||
Sbjct 611 TGAGTGAAGGGGTATCCATTAATGGGGTATTGTATTACTTAGGC-GAAACGTCCGCTTGG 669
Query 480 -AT--CAAGGA-T-CG-TTT---G-A--A-TATGTGATAGTTTGCTTTGACGTTCGGTAT 526
|| || || | | ||| | | | |||| ||||||||||||||| || ||| |
Sbjct 670 GATAATAAAGATTATGATTTAAAGTATGATTATGCGATAGTTTGCTTTGATATTAGGTCT 729
Query 527 GAGACATTCACCTATATTGACG-TAGAAAAGTTTTGTCGATTAATAAACTACAAGGGCAA 585
|| | ||||| | | |||| | |||||| ||||||| |||| |||||||| ||||| ||
Sbjct 730 GAAAAATTCATTTTTTTTGA-GATAGAAAGGTTTTGTAGATTGATAAACTATAAGGGTAA 788
Query 586 ATTAGCTATGATTTATTGGGAGGATGATGTCGACATTTATGCCAT-GTGTAATATTCCGA 644
|||||| | ||||||| |||||||||||| | | ||| | || |||| | || |
Sbjct 789 ATTAGCGGTAATTTATTTCGAGGATGATGTC-A-A-CTAT-CAATCGTGT-CT-TT---A 839
Query 645 AGGATCTCGATGAGTATT-TGGAGGAAAATCTCGACGTTGATGCCACTAATGAGTTGCGT 703
| | || || ||| || | | || | | |||||||| |||| ||||| |
Sbjct 840 TCG-T-AAGA--AGAATTATGTA-G--AA---C--C--TGATGCCATTAATAAGTTGAAT 885
Query 704 GTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGGTCTAAATATGCCTACACTTGGACC 763
|||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 886 GTGTGGGTTCTAGAGGATGTAGAGAAACAGGAATGGTAGAAATATGCCTACACTTGGACC 945
Query 764 GATGATACATTC-TTC--CGTCGTCACCTTTCCATCGCT-GGA-G-CCACTGCTTCAGGT 817
||||||| |||| ||| |||||| | ||||| | ||| | | | |||||| |||
Sbjct 946 GATGATATATTCTTTCGTCGTCGTGAGGTTTCCGTTGCTCCAACGACTGCTGCTTGGGGT 1005
Query 818 GAAATAGTGTTTTCCATGCGCAAGTATACAT-GTAAACAACCGTTTTATGTTTTCTACTT 876
|| ||||| ||||| ||| | ||||||| | | |||||| |||||||||||||||||
Sbjct 1006 GACATAGTCTTTTCGATGTGTGAGTATAC-TCCTGGACAACCATTTTATGTTTTCTACTT 1064
Query 877 CAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGCGAAG-CGTTTA 935
||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1065 CAATCCCGAAAAGAGCACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAGGCGTTT- 1123
Query 936 AGAAAACTTGTAGCGTTCGCACGTTTGTAAACCACATAGAGGATCTTGATGTTAACGATT 995
| | |||||| ||| |||||| || || |||| |||||| ||||||| ||||
Sbjct 1124 -G-----T---AGCGTTTACACCTTTGTAGACGACGTAGAAGATCTTAATGTTAAGGATT 1174
Query 996 TAAAACA-ACTCAAGTCAGTCCA-TCCTCCATT 1026
||||| | ||||||| || |||| | |||||||
Sbjct 1175 TAAAA-ATACTCAAGCCA-TCCAATGCTCCATT 1205
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 130 bits (70), Expect = 3e-29
Identities = 188/241 (78%), Gaps = 23/241 (10%)
Strand=Plus/Plus
Query 694 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGG-TCTAAATATGCCT 752
||||||| || ||||||||||||||||||||||||||||| ||||| || || |||| ||
Sbjct 261 TGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCT 319
Query 753 ACACTTGGACCG-ATGA-T-ACATTC-TTCCGT-CGT-C-ACCTTTCCA-TCGCTGGAGC 804
|||||| |||| | || | | | || || || | | | | |||| | | |||||||
Sbjct 320 ACACTTT-ACCGGA-GAATGA-AGTCCTTG-GTTCCTGCGAGTTTTC-AGTTGCTGGAGT 374
Query 805 CACTGCTTCAGGTGAAATAGTGTTT-TCCATGCGCAAGTATACATGTAAACAACCGTTTT 863
||||| ||| || || || ||| | ||| |||||||||||||||| | || |
Sbjct 375 GACTGCAAGAGGCGATATTGT-TTTGTGTATG---AAGTATACATGTAAAC--C-GTACT 427
Query 864 ATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTG 923
|||| ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||||
Sbjct 428 ATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTG 487
Query 924 G 924
|
Sbjct 488 G 488
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 78.7 bits (42), Expect = 1e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 694 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGAAATGGTC 741
||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 582 TGAGTTGTGTGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 629
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 855 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAA 891
||||||||||||||||||||||||||||||||| |||
Sbjct 392 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAA 428
> AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-17340972
REVERSE LENGTH=921
Length=921
Score = 63.9 bits (34), Expect = 3e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 889 GAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGCGAA 928
||||||| |||||||||||||||||||||||||||| |||
Sbjct 585 GAACACTATCCAACGTGTTGAAATCCAAGGTTTTGGAGAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5