BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936070
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02510.1 | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | ... 359 2e-98
> AT4G02510.1 | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159
| translocon at the outer envelope membrane of chloroplasts
159 | chr4:1104766-1109600 FORWARD LENGTH=4752
Length=4752
Score = 359 bits (194), Expect = 2e-98
Identities = 271/304 (89%), Gaps = 22/304 (7%)
Strand=Plus/Plus
Query 120 GACAATGACTGTGGATATGACGGCGTCAATGCAGAACACAG---T-CT-TA-CT-GTTGG 172
||| ||||||||||||||||||||||||||||||||||||| | || || || | ||
Sbjct 3802 GACCATGACTGTGGATATGACGGCGTCAATGCAGAACACAGTCTTGCTCTAGCTAGCCGG 3861
Query 173 TATCCCTGCCACAGCTACTGTTCAAGTCACCAAGAACAAGAAAGAGTCCAACATTCATCT 232
| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 3862 T-TCCCTGCCACAGCTACTGTCCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATCT 3920
Query 233 GGACTCCCCAT-TGTCTGCTAAGCACGGCGAGAATGGATCCACCATGGCA-GG---G--- 284
||||||| | | |||||||||||||||| ||||||||||||||||||||| || |
Sbjct 3921 GGACTCCTC-TGTGTCTGCTAAGCACGGGGAGAATGGATCCACCATGGCAGGGTTCGATA 3979
Query 285 --C---ATGTAGGCAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAACT 339
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3980 TTCAGAATGTAGGCAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAATT 4039
Query 340 TGAGGAACAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTAGGAGAGAACATCGCCA 399
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4040 TGAGGAAGAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTGGGAGAGAACATCGCCA 4099
Query 400 CTGG 403
||||
Sbjct 4100 CTGG 4103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22806302738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5