BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936073 Length=494 Score E Sequences producing significant alignments: (Bits) Value AT2G03000.1 | Symbols: | RING/U-box superfamily protein | chr2... 228 5e-59 AT2G07723.1 | Symbols: | pseudogene, similar to orf454~homolog... 89.8 2e-17 > AT2G03000.1 | Symbols: | RING/U-box superfamily protein | chr2:875233-877207 FORWARD LENGTH=1608 Length=1608 Score = 228 bits (123), Expect = 5e-59 Identities = 143/153 (93%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 249 GTAGTGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTGGAGGAATGGAGCAAAGGTGAT 308 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 1417 GTAGCGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTCGAGGAATGGAGCAAAAGTGAT 1476 Query 309 ATGGAGACGGAGCTGCCATGTAAACACAAGTATCACTTGAAGTGTGTGAAGAAGTGGTTG 368 ||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1477 ATGGAAACAGAGCTGCCATGTAAACACAAGTATCACTTGGAGTGTGTGGAGAAGTGGTTG 1536 Query 369 GAGATTCACTCCACGTGTCCTCAATGTAGATAC 401 |||||||| || |||||||||||||||||||| Sbjct 1537 AAGATTCACACCTCGTGTCCTCAATGTAGATAC 1569 > AT2G07723.1 | Symbols: | pseudogene, similar to orf454~homology with two ORFs from Marchantia polymorpha mtDNA (orf169 and orf322), high similarity to 3'-terminal part of ccl1 of Rhodobacter, blastp match of 76% identity and 3.4e-193 P-value to GP|459537|emb|CAA54966.1||X78036 orf454~homology with two ORFs from Marchantia polymorpha mtDNA (orf169 and orf322), high similarity to 3'-terminal part of ccl1 of Rhodobacter {Oenothera berteriana} | chr2:3441921-3444238 REVERSE LENGTH=2318 Length=2318 Score = 89.8 bits (48), Expect = 2e-17 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 447 CCGGTCGGGGCGGGGGTAAGCTTGTGAAGAAGCGAGCTTATccccccc 494 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1604 CCGGTCGGGGCGGGGGTAAGCTTGTGAAGAAGCGAGCTTATCCCCCCC 1557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559814943 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5