BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936073

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03000.1 | Symbols:  | RING/U-box superfamily protein | chr2...   228    5e-59
  AT2G07723.1 | Symbols:  | pseudogene, similar to orf454~homolog...  89.8    2e-17


> AT2G03000.1 | Symbols:  | RING/U-box superfamily protein | chr2:875233-877207 
FORWARD LENGTH=1608
Length=1608

 Score =  228 bits (123),  Expect = 5e-59
 Identities = 143/153 (93%), Gaps = 0/153 (0%)
 Strand=Plus/Plus

Query  249   GTAGTGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTGGAGGAATGGAGCAAAGGTGAT  308
             |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  1417  GTAGCGATGGTGGAGAAAGGAGAGTGTGTGATATGTTTCGAGGAATGGAGCAAAAGTGAT  1476

Query  309   ATGGAGACGGAGCTGCCATGTAAACACAAGTATCACTTGAAGTGTGTGAAGAAGTGGTTG  368
             ||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  1477  ATGGAAACAGAGCTGCCATGTAAACACAAGTATCACTTGGAGTGTGTGGAGAAGTGGTTG  1536

Query  369   GAGATTCACTCCACGTGTCCTCAATGTAGATAC  401
              |||||||| || ||||||||||||||||||||
Sbjct  1537  AAGATTCACACCTCGTGTCCTCAATGTAGATAC  1569


> AT2G07723.1 | Symbols:  | pseudogene, similar to orf454~homology 
with two ORFs from Marchantia polymorpha mtDNA (orf169 and 
orf322), high similarity to 3'-terminal part of ccl1 of Rhodobacter, 
blastp match of 76% identity and 3.4e-193 P-value 
to GP|459537|emb|CAA54966.1||X78036 orf454~homology with two 
ORFs from Marchantia polymorpha mtDNA (orf169 and orf322), 
high similarity to 3'-terminal part of ccl1 of Rhodobacter 
{Oenothera berteriana} | chr2:3441921-3444238 REVERSE LENGTH=2318
Length=2318

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand=Plus/Minus

Query  447   CCGGTCGGGGCGGGGGTAAGCTTGTGAAGAAGCGAGCTTATccccccc  494
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1604  CCGGTCGGGGCGGGGGTAAGCTTGTGAAGAAGCGAGCTTATCCCCCCC  1557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5