BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936082
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1... 1234 0.0
> AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA
1.3, EXPA15 | expansin A15 | chr2:916854-918643 REVERSE LENGTH=1358
Length=1358
Score = 1234 bits (668), Expect = 0.0
Identities = 760/805 (94%), Gaps = 4/805 (0%)
Strand=Plus/Plus
Query 1 CTCTGCACTTTCTCAAACAGAATGTTCATGGGAAAGATGAGTCTTTTGGGATTTGCTCTG 60
||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 69 CTCTGCACTTTCTCAAAGAGAATGTTCATGGGTAAGATGGGTCTTTTGGGAATTGCTCTG 128
Query 61 GTGGGATTTGCTGCAATGGTGTGCTCTGTTCAT-GCTTATGACGCTGGATGGGTCAATGC 119
| | ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 129 TTTTGTTTTGCTGCAATGGTGTGCTCTGTTCATGGC-TATGACGCTGGATGGGTCAATGC 187
Query 120 TCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTA 247
Query 180 TGGGAATCTCTATAGTCAAGGGTACGGTACCAACACGGCGGCGTTGAGCACTGCTCTGTT 239
||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 248 CGGGAACCTCTACAGTCAAGGTTACGGGACCAACACGGCGGCGTTGAGCACTGCTCTGTT 307
Query 240 CAACAACGGTCTTAGCTGCGGCGCGTGTTTCGAGATCAAGTGTCAGAGCGACGGCGCGTG 299
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 308 CAACAACGGTCTTAGCTGCGGGGCTTGTTTTGAGATCAAGTGTCAGAGCGACGGCGCGTG 367
Query 300 GTGTTTACCTGGTGCTATCATAGTCACAGCCACCAATTTCTGTCCTCCTAACAACGCTCT 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTGTTTACCTGGTGCTATCATTGTCACAGCCACCAATTTCTGTCCTCCTAACAACGCTCT 427
Query 360 TCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTCAGCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTCAGCC 487
Query 420 -GATTTTCCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCTTACAGAAGGG 478
| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 488 TGTTTTTC-AACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTACAGAAGGG 546
Query 479 TTCCGTGCATGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCTTACTTCAACC 538
||||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 547 TTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGTCACTCTTACTTCAACC 606
Query 539 TGGTTTTGGTGACCAATGTTGGTGGTGCCGGAGATGTTCACTCTGTAGCGGTTAAAGGTT 598
| || ||||||||||||||||||||||| ||||||||||| || || |||||||||||||
Sbjct 607 TTGTCTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATTCGGTTGCGGTTAAAGGTT 666
Query 599 CAAGAACAAGGTGGCAACAAATGTCAAGAAACTGGGGTCAAAACTGGCAAAGCAACAATC 658
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 667 CTAGAACAAGGTGGCAACAAATGTCAAGAAACTGGGGACAGAACTGGCAAAGCAACAATC 726
Query 659 TTTTAAACGGTCAAGCATTGTCCTTTAAGGTTACTGCTAGTGATGGTCGTACCGTCGTCT 718
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 727 TCTTAAACGGTCAAGCATTGTCATTTAAGGTGACTGCTAGTGATGGTCGTACCGTCGTCT 786
Query 719 CTAACAACATTGCTCCGGCTAGTTGGTCTTTTGGACAAACCTTCACCGGCCGTCAATTCC 778
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 787 CTAACAACATTGCTCCAGCTAGTTGGTCCTTTGGACAAACCTTCACCGGCCGTCAATTCC 846
Query 779 GTTGAAATTGTGTCAAGTTCGGTTT 803
||| |||||| ||||||||||||||
Sbjct 847 GTTAAAATTGAGTCAAGTTCGGTTT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5