BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936093
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03120.1 | Symbols: ATSPP, SPP | signal peptide peptidase | ... 2056 0.0
> AT2G03120.1 | Symbols: ATSPP, SPP | signal peptide peptidase
| chr2:937420-940339 FORWARD LENGTH=1425
Length=1425
Score = 2056 bits (1113), Expect = 0.0
Identities = 1191/1229 (97%), Gaps = 3/1229 (0%)
Strand=Plus/Plus
Query 1 ACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTCGCTAATCTCGCTCTCGCAG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 115 ACGAAACACAAGAAGCAATTATGAAGAATTGTGAGAGATTTGCTAATCTCGCTCTCGCAG 174
Query 61 GCTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTTTGACATTGGCACCACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAG 234
Query 121 CATGTATCACTGTTTATGTTGGTTGCTTTCGTTCCGTCAAGGATACTCCTCCAACGGAGA 180
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 235 CATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGGAGA 294
Query 181 CGATGTCTAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCTATGCTTCTCTCAC 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCTATGCTTCTCTCAC 354
Query 241 TTTTCTTATTGTTCAAGTTTCTCTCGAAGGATTTGGTCAATGCTGTTCTAACAGCTTACT 300
||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 355 TTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACT 414
Query 301 TCTTTGTTCTTGGGATTGTCGCTCTTTCGGCGACATTGTTACCAGCCATCAGAAGATTTT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 TCTTTGTTCTTGGGATTGTCGCTCTTTCAGCGACATTGTTACCAGCCATCAGAAGATTTT 474
Query 361 TGCCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAATCTTTGG 420
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 TACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTCTTTGG 534
Query 421 AGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATACCTGGAACGTTCTTCTGTGCGT 480
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 535 AGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAACATTCTTCTGTGCGT 594
Query 481 GGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATTCTCGGCCTTTCCTTCTGCATTC 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 GGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTC 654
Query 541 AGGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGCTGGAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 AGGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGCAGGAC 714
Query 601 TATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCTGTTATGGTTAGTGTTGCCAAAT 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 TATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAAT 774
Query 661 CCTTCGATGCTCCAATAAAGCTTTTATTCCCTACGGGTGATGCTCTTAGACCCTATTCTA 720
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 775 CCTTCGATGCTCCAATTAAGCTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTA 834
Query 721 TGCTTGGTCTTGGTGATATTGTCATTCCAGGTATTTTTGTTGCACTAGCTCTAAGGTTTG 780
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 835 TGCTTGGTCTTGGTGACATTGTCATTCCGGGTATTTTCGTTGCACTAGCTCTAAGATTTG 894
Query 781 ATGTGTCAAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATGTGTCAAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTG 954
Query 841 GTGTTATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCCCAGCCTGCTTTGTTAT 900
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 955 GTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGCCTGCTTTGTTAT 1014
Query 901 ACATTGTCCCAGCCGTAATTGGGTTTTTGGCTTCTCACTGCATTTGGAACGGTGACATCA 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1015 ACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCACTGCATTTGGAACGGTGACATCA 1074
Query 961 AACCGTTGTTGGCGTTTGATGAATCAAAGACAGAGGAACCAAAGACTGATGAATCAAAGA 1020
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1075 AACCGTTGTTGGCGTTTGATGAATCAAAGACAGAGGAAGCAACGACTGATGAATCAAAGA 1134
Query 1021 CTAGTGAGGAGGTTAATAAAGCTCATGAAGAATGAGGAAAAATCGAGAAAGAAGGGCAGA 1080
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 CTAGTGAGGAGGTTAATAAAGCTCATGATGAATGAGGAAAAATCGAGAAAGAAGGGCAGA 1194
Query 1081 GGAGAAATATATACACAGAAATGTGTTTTAAAATATGGAACAAGAAGGAAAACAATTTTG 1140
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1195 GGAGAAATATATACACATAAATGTGTCTTAATATATGGAACAAGAAGGAAAACAATTTTG 1254
Query 1141 TTTCCAA-TGATGATCAATCAGTCCCTTCTAACCC-ttttttgttttttttAGATTTTCA 1198
||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1255 TTTCCAAATGATCATCAATCAGTCCCTTCTAACCCCTTTTTTGTTTTTTT-AGATTTTCA 1313
Query 1199 AACTTTCTTTTGGCAAAGACTTGTGTAAG 1227
|||||||||||||| ||||||||||||||
Sbjct 1314 AACTTTCTTTTGGCCAAGACTTGTGTAAG 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5