BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936100
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03160.1 | Symbols: ASK19, SK19 | SKP1-like 19 | chr2:959645... 551 3e-156
AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:933587... 331 4e-90
AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214... 241 8e-63
AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:335557... 235 4e-61
> AT2G03160.1 | Symbols: ASK19, SK19 | SKP1-like 19 | chr2:959645-960247
FORWARD LENGTH=603
Length=603
Score = 551 bits (298), Expect = 3e-156
Identities = 512/613 (84%), Gaps = 23/613 (4%)
Strand=Plus/Plus
Query 21 ATGTCTTCGAACATGATTGTGTTGACTAGCTCCGATGGCGAGTCTTTCCAGGTTGAAGAA 80
||||||||||| | |||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 1 ATGTCTTCGAAAAAGATTGTGTTGACAAGCTCCGATGGTGAATCTTTCAAGGTTGAAGAA 60
Query 81 GTGGTTGCAAGAAAGCTGCAGATCGTAGGACACATGCTCGAAGACGACTGTGTTATTAAC 140
||||| |||||||| |||||||||||||||||||| ||||||||||||||| || |||
Sbjct 61 GTGGTGGCAAGAAAACTGCAGATCGTAGGACACATTATCGAAGACGACTGTGCTACAAAC 120
Query 141 GCAATCCCTCTTCAAAACGTTACCGGAAAGACTCTCTCCATGGTTCTCGAGTATTGCAAG 200
||||||| ||| ||||||||||||| ||| |||| ||| |||| ||||||| ||||||
Sbjct 121 AAAATCCCTATTCCAAACGTTACCGGAGAGATTCTCGCCAAGGTTATCGAGTACTGCAAG 180
Query 201 AAACACG-T--CGACGATG-TGGTCGCTGAT-GATGTCGTGCCTGAATCAAC-A-G-AAG 252
||||||| | ||||||| | | || || | || | | || ||||||| | | | |||
Sbjct 181 AAACACGTTGAAGACGATGAT-GACG-TGGTGGA-GAC--GCATGAATCATCGACGAAAG 235
Query 253 GAGATGGTGCA-TCTGAGGAGCCGAAGAAGAAGGTC-GATGATGTGGTGGTGCCTAAATC 310
||||| || | ||||||| |||||||||| | | |||||||||| || ||| ||||
Sbjct 236 GAGATAAAACAGT-TGAGGAGGCGAAGAAGAA-GCCTGATGATGTGGCCGTACCTGAATC 293
Query 311 ATCAGAAGAAGATGATGCATCTGAGGAGGCGAAGAAGAAGCTCGATGCTTGGGACGCAAA 370
| | |||| |||||||| | ||||||| |||| ||||||| ||| ||||| |||||
Sbjct 294 AACTGAAGGAGATGATGAAGCTGAGGATAAGAAGGAGAAGCTTAATGAGTGGGATGCAAA 353
Query 371 GTTCATGAAGGATCTCAATACTGAGACGATCTTCAG-CATCATTCTCGCTGCTAACTATC 429
||||||||||||| || ||| | ||||||||||| | ||| ||||| |||||||||||||
Sbjct 354 GTTCATGAAGGATTTCGATATTAAGACGATCTTC-GACATTATTCTGGCTGCTAACTATC 412
Query 430 TCAACGTCAAAGGTCTACTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATA 489
|||||||| ||||||| |||||||| |||| ||||| ||||||||||||| |||||||
Sbjct 413 TCAACGTCCAAGGTCTTTTTGATCTCTGTAGCAAGACCATTGCAGATTACATAAAAGATA 472
Query 490 TGACGCCAGAGGAAGTTCGAGAACTCTTTAACATCGAGAATGATTTCACGCCTGAAGAAG 549
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 TGACGCCAGAGGAAGTTCGAGAACTCTTTAACATCGAGAATGATTTCACACCTGAAGAAG 532
Query 550 AGGAAG-AGATTCGCAAGGAGAACGCTTGGACTTTTGAGGCT-GCTTCAGCACAAGAAGT 607
| |||| | |||||||| || |||||||||||||||||| | | | | |||| ||||
Sbjct 533 AAGAAGCA-ATTCGCAATGAAAACGCTTGGACTTTTGAG-CAAGATGGAAAACAACAAGT 590
Query 608 TCCAAAACCCTAG 620
|||||||||||||
Sbjct 591 TCCAAAACCCTAG 603
> AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:9335876-9336459
REVERSE LENGTH=534
Length=534
Score = 331 bits (179), Expect = 4e-90
Identities = 258/295 (87%), Gaps = 9/295 (3%)
Strand=Plus/Plus
Query 332 TGAGGAGGCGAAGAAGAAGCTCGATGCTTGGGACGCAAAGTTCATGAAGGATCTCAATAC 391
||| ||||||||| |||| |||||||||||||||||| |||||||||| || | |||
Sbjct 243 TGATGAGGCGAAGCAGAATCTCGATGCTTGGGACGCAGAGTTCATGAAAAATATTGATA- 301
Query 392 T-GAGACGATCTTC-AGCATCATTCTCGCTGCTAACTATCTCAACGTCAAAGGTCTACTT 449
| || || |||||| ||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 302 TGGAAACAATCTTCAAGC-TCATTCTCGCTGCTAACTATCTCAACGTCGAAGGTCTTCTT 360
Query 450 GATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATATGACGCCAGAGGAAGTTCGA 509
| ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GGTCTCACTTGCCAGACTGTTGCAGATTACATCAAAGATAAGACGCCAGAGGAAGTTCGA 420
Query 510 GAACTCTTTAACATCGAGAATGATTTCACGCCTGAAGAAGAGGAAGA-G--ATTCGCAAG 566
||||||||||| ||||||||||||||||| | ||||||||| ||||| | |||||||||
Sbjct 421 GAACTCTTTAATATCGAGAATGATTTCACACATGAAGAAGAAGAAGAAGCGATTCGCAAG 480
Query 567 GAGAACGCTTGGACTTTTGAGGCTG-CTTCAGCACAAGAAGTTCCAAAACCCTAG 620
|||||||||||| |||||||||||| | || ||| |||| |||||| ||||||
Sbjct 481 GAGAACGCTTGGGCTTTTGAGGCTGACA-CAAAACACGAAGATCCAAAGCCCTAG 534
Score = 291 bits (157), Expect = 8e-78
Identities = 194/212 (92%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 21 ATGTCTTCGAACATGATTGTGTTGACTAGCTCCGATGGCGAGTCTTTCCAGGTTGAAGAA 80
|||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1 ATGTCTTCTAACAAGATTGTGTTGACTAGTTCCGATGGCGAGTCTTTCCAAGTTGAGGAA 60
Query 81 GTGGTTGCAAGAAAGCTGCAGATCGT-AGGACACATGCTCGAAGACGACTGTGTTATTAA 139
||||| ||| |||| ||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 61 GTGGTGGCACGAAAACTGCAGATCGTAAAG-CACCTGCTCGAAGACGACTGTGTTATTAA 119
Query 140 CGCAATCCCTCTTCAAAACGTTACCGGAAAGACTCTCTCCATGGTTCTCGAGTATTGCAA 199
|| ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||
Sbjct 120 CGAAATCCCTCTTCAAAACGTTACAGGAAATATTCTCTCCATCGTTCTCGAGTATTGCAA 179
Query 200 GAAACACGTCGACGATGTGGTCGCTGATGATG 231
||||||||||||||||||||||| ||||||||
Sbjct 180 GAAACACGTCGACGATGTGGTCGATGATGATG 211
> AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214-964901
FORWARD LENGTH=688
Length=688
Score = 241 bits (130), Expect = 8e-63
Identities = 220/262 (84%), Gaps = 12/262 (5%)
Strand=Plus/Plus
Query 333 GAGGAGGCGAAGAA-GAAGCTCGATG-CTTGGGACGCAAAGTTCATG-AAGGATCTCAAT 389
||||| || ||||| | ||||| | | ||||||||||| |||||||| ||| || | ||
Sbjct 265 GAGGAAGCCAAGAACG-AGCTC-AGGACTTGGGACGCAGAGTTCATGAAAGAAT-TTGAT 321
Query 390 ACT-GAGACGA-TC-TTCAGCATCATTCTCGCTGCTAACTATCTCAACGTCAAAGGTCTA 446
| | || || | || | | | |||||||||||| ||| |||||||||||| ||| |||
Sbjct 322 A-TGGAAAC-AGTCATGAAAC-TCATTCTCGCTGTTAATTATCTCAACGTCCAAGATCTT 378
Query 447 CTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATATGACGCCAGAGGAAGTT 506
|||| ||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 379 CTTGGTCTCACTTGCCAGACCGTTGCAGATCACATGAAAGATATGTCGCCAGAGGAAGTT 438
Query 507 CGAGAACTCTTTAACATCGAGAATGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCAAG 566
||||||||||||||||| |||||||||| ||| ||||||||||| || | |||||| |||
Sbjct 439 CGAGAACTCTTTAACATTGAGAATGATTACACACCTGAAGAAGAAGACGCGATTCGTAAG 498
Query 567 GAGAACGCTTGGACTTTTGAGG 588
|| ||||||||| |||||||||
Sbjct 499 GAAAACGCTTGGGCTTTTGAGG 520
> AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:3355571-3356359
FORWARD LENGTH=789
Length=789
Score = 235 bits (127), Expect = 4e-61
Identities = 229/276 (83%), Gaps = 15/276 (5%)
Strand=Plus/Plus
Query 315 GAAGAAGATGATGCATCTGAGGAGGCGAAGAAGAAGCTCGA-TGCTTGGGACGCAAAGTT 373
|||||||| || | | | ||||||||||||||||| || || | | |||||||| |||||
Sbjct 306 GAAGAAGACGAAG-A-C-GAGGAGGCGAAGAAGAATCTAGACT-CGTGGGACGCTAAGTT 361
Query 374 CAT-GAAGGATCTCA-ATACT-GAGACGATCTTCAGCATCATTCTCGCTGCTAACTATCT 430
||| ||| | || | || || ||||| ||||||| |||||||||||||| ||||| ||
Sbjct 362 CATGGAA-AAGCT-AGAT-CTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTACCT 418
Query 431 CAACGTCAAAGGTCTACTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATAT 490
||| || |||| || || | | || |||||||||| ||||| ||||||||||| || |
Sbjct 419 AAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGACAA 478
Query 491 GACGCCAGAGGAAGTTCGAGA-ACTCTTT-AACATCGAGAATGATTTCACGCCTGAAGAA 548
|| ||||||||||| ||||| | | ||| ||||||||||| ||||||||||||||||||
Sbjct 479 AACACCAGAGGAAGTACGAGAGA-T-TTTCAACATCGAGAACGATTTCACGCCTGAAGAA 536
Query 549 GAGGAAGAGATTCGCAAGGAGAACGCTTGGACTTTT 584
||||||||||||||||||||||| ||||||||||||
Sbjct 537 GAGGAAGAGATTCGCAAGGAGAATGCTTGGACTTTT 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5