BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936101
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03170.1 | Symbols: ASK14, SK14 | SKP1-like 14 | chr2:961322... 414 4e-115
AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:933587... 243 2e-63
> AT2G03170.1 | Symbols: ASK14, SK14 | SKP1-like 14 | chr2:961322-961771
FORWARD LENGTH=450
Length=450
Score = 414 bits (224), Expect = 4e-115
Identities = 389/465 (84%), Gaps = 26/465 (6%)
Strand=Plus/Plus
Query 21 ATGTCTTCAAACAAGATTGTTTTGACTAGCTCCGATGGCGAATCTTTCGAGGTTGAAGAA 80
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCCAACAAGATTGTTTTGTCTAGCTCCGATGGCGAATCTTTCGAGGTTGAAGAA 60
Query 81 GTGGTAGCAAGAAAACTTCAGATCGTAGGA-CACATGCTCGAAGACGACTGTGTTATTAA 139
| ||| ||||||||||| | ||||| ||| |||||| | ||||||||||||||| |||
Sbjct 61 GCGGTGGCAAGAAAACTGAAAATCGT-GGAACACATGATTGAAGACGACTGTGTTGTTAC 119
Query 140 CGAAATCCCTCTTCAAAACGTTACCGGAGATATCCTCTCCATGGTTATCGAGTATTGCAA 199
||| |||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||
Sbjct 120 CGAGGTCCCTCTTCAAAACGTCACCGGAAAGATCCTCTCCATTGTTGTCGAGTATTGCAA 179
Query 200 -AACACACGTCGACGAAGAAGAAAGCGAGGAAGCTCAGACGAAGCTCAAGACTTGGGACG 258
|| |||||||| || ||||||||||| || | | |||||||||||||||
Sbjct 180 GAA-ACACGTCGTTGACGAAGAAAGCGACGA-G-T----------TCAAGACTTGGGACG 226
Query 259 AAGAGTTCATGAAGAAATTTGAT-ATCAAAACACTCTTACAAATCATT-CTCGCTGCTAA 316
||||||||||||||||||||||| | | | | |||| ||| || || |||||||||||
Sbjct 227 AAGAGTTCATGAAGAAATTTGATCAGCCTA-CGGTCTTCCAACTC-TTGCTCGCTGCTAA 284
Query 317 CTATCTCAATGTTAAAGGCCTTCTTGATCTCGTTT-CTCAGACAATTGCAGATAC-CATC 374
|||||||||| | |||||||||||||||||| | | |||| || |||||||| | ||||
Sbjct 285 CTATCTCAATATCAAAGGCCTTCTTGATCTC-TCTGCTCAAACCGTTGCAGAT-CGCATC 342
Query 375 AAAGATTACACGCCAGAACAAATTCGAGAAGTCTTCGG-AGTCGAGAACGATTACACTGA 433
|||||| | || ||||| ||||||||||| ||||| | |||||||||||| |||
Sbjct 343 AAAGATAAGACTCCAGAGGAAATTCGAGAAATCTTCAACA-TCGAGAACGATTTCACACC 401
Query 434 GGAGGAAGAAGCAGAGGTTCGCAAGGAAAACGCATGGGCTTTTGA 478
|| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 402 CGAAGAAGAAGCAGCGGTTCGCAAGGAAAACGCATGGGCTTTTGA 446
> AT3G25650.1 | Symbols: ASK15, SK15 | SKP1-like 15 | chr3:9335876-9336459
REVERSE LENGTH=534
Length=534
Score = 243 bits (131), Expect = 2e-63
Identities = 175/196 (89%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 21 ATGTCTTCAAACAAGATTGTTTTGACTAGCTCCGATGGCGAATCTTTCGAGGTTGAAGAA 80
|||||||| ||||||||||| |||||||| ||||||||||| |||||| | ||||| |||
Sbjct 1 ATGTCTTCTAACAAGATTGTGTTGACTAGTTCCGATGGCGAGTCTTTCCAAGTTGAGGAA 60
Query 81 GTGGTAGCAAGAAAACTTCAGATCGT-AGGACACATGCTCGAAGACGACTGTGTTATTAA 139
||||| ||| ||||||| |||||||| | | ||| |||||||||||||||||||||||||
Sbjct 61 GTGGTGGCACGAAAACTGCAGATCGTAAAG-CACCTGCTCGAAGACGACTGTGTTATTAA 119
Query 140 CGAAATCCCTCTTCAAAACGTTACCGGAGATATCCTCTCCATGGTTATCGAGTATTGCAA 199
|||||||||||||||||||||||| ||| |||| |||||||| ||| |||||||||||||
Sbjct 120 CGAAATCCCTCTTCAAAACGTTACAGGAAATATTCTCTCCATCGTTCTCGAGTATTGCAA 179
Query 200 -AACACACGTCGACGA 214
|| ||||||||||||
Sbjct 180 GAA-ACACGTCGACGA 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25318010088
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5