BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936103
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03200.1 | Symbols: | Eukaryotic aspartyl protease family p... 2239 0.0
> AT2G03200.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:966451-967918 REVERSE LENGTH=1468
Length=1468
Score = 2239 bits (1212), Expect = 0.0
Identities = 1361/1433 (95%), Gaps = 10/1433 (1%)
Strand=Plus/Plus
Query 5 cacacacacacacacaAA-AATGGcttcttcttcttcttccttttctttattatttcctt 63
||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 8 CACTCACACACACACAAACCATGGCTTCTTCTTCTTCTT-C--TTCTTTATTATTTCCTT 64
Query 64 tctttcttattcttttttcatgcttt-atCGCAGTTTCATCATCAAGAAGATCATTAATC 122
|||||||||||||||||||||| ||| ||| | |||||||| ||||||||||||||||||
Sbjct 65 TCTTTCTTATTCTTTTTTCATG-TTTAATCTCGGTTTCATCGTCAAGAAGATCATTAATC 123
Query 123 GACCGTCCTCTTCCAAAAAACCTTCCAAGATCCGGTTTTCGATTAAGTCTTCGACATGTG 182
|||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 124 GACCGTACTCTTCCGAAAAACCTTCCGAGATCCGGTTTTCGATTGAGTCTTCGACATGTG 183
Query 183 GATTCCGGTAAAAACCTCACCAAGATCCAAAAGATTCAAAGAGGGATTAACCGTGGATTC 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 GATTCCGGTAAAAACCTCACCAAGATCCAAAAGATTCAGAGAGGGATTAACCGTGGATTC 243
Query 243 CATAGATTAAACAGGTTAGGAGCTGTAGCTGTTTTGGCTGTAGCTTCTAATCCTGATGAT 302
|||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 244 CATAGATTAAACAGATTAGGAGCTGTAGCTGTTTTAGCTGTAGCCTCTAAGCCTGATGAT 303
Query 303 ACTAATAACATTAAAGCACCTACTCATGGAGGAAGCGGTGAGTTTCTTATGGAGTTATCT 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 304 ACTAATAACATTAAAGCACCTACTCATGGAGGAAGCGGTGAGTTTCTTATGGAGTTGTCT 363
Query 363 ATTGGAAACCCGGCGGTTAAATACGCAGCTATTGTTGATACCGGAAGTGACCTTATATGG 422
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 364 ATTGGAAACCCGGCGGTTAAATACTCTGCTATTGTTGATACCGGAAGTGACCTTATTTGG 423
Query 423 ACTCAATGCAAGCCTTGTACTGAATGTTTTGATCAACCAACTCCGATTTTCGACCCCGAG 482
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 424 ACTCAATGCAAGCCTTGCACTGAATGTTTTGATCAACCAACTCCGATTTTTGACCCGGAG 483
Query 483 AAATCTTCCTCTTACTCGAAAGTAGGATGTTCTTCTGGTCTTTGTAATGCATTGCCTCGA 542
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 484 AAATCTTCCTCTTACTCGAAAGTAGGATGCTCTTCTGGTCTTTGTAACGCATTGCCTCGA 543
Query 543 TCAAACTGCAACGAAGACAAAGATTCTTGTGAGTATTTGTATACTTATGGAGATTACTCA 602
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 TCAAACTGTAACGAAGATAAAGATGCTTGTGAGTATTTGTATACTTATGGAGATTACTCA 603
Query 603 TCCACAAGAGGGCTCTTGGCCACAGAAACCTTCACTTTCGAGGACGAGAACTCGATTTCT 662
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 604 TCTACAAGAGGGCTCTTGGCCACGGAAACGTTCACTTTCGAGGACGAGAACTCGATTTCT 663
Query 663 GGTATAGGGTTTGGGTGTGGGGTTGAGAACGAAGGAGATGGGTTCTCTCAAGGGTCAGGT 722
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 664 GGTATCGGGTTTGGGTGTGGGGTTGAGAACGAAGGCGACGGGTTCTCTCAAGGGTCAGGT 723
Query 723 CTTGTAGGTCTTGGTCGCGGATCGCTCTCGCTTATTTCTCAGCTCAAAGAGACTAAATTC 782
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 724 CTTGTAGGTCTTGGTCGCGGACCGCTCTCGCTTATTTCTCAGCTCAAAGAGACTAAGTTT 783
Query 783 TCTTATTGCTTGACCTCGATTGAGGATAGTGAAGCATCTAGCTCGTTGTTTATTGGATCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TCTTATTGCTTGACCTCGATTGAGGATAGTGAAGCATCTAGCTCGTTGTTTATTGGATCT 843
Query 843 TTAGCCTCGGGTATCGTCAACAAAACCGGTGCAAATTTAGATGGTGAAGTTACCAAAACT 902
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 844 TTAGCCTCGGGTATCGTCAACAAAACAGGTGCAAGTTTAGATGGTGAAGTCACCAAAACG 903
Query 903 ATGTCGTTGCTACGAAATCCAGATCAGCCTTCGTTCTATTACCTTGAGTTACAAGGCATC 962
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 ATGTCTTTGCTACGAAATCCAGATCAGCCTTCGTTCTATTACCTTGAGTTACAAGGCATC 963
Query 963 ACCGTTGGAGCAAAACGCCTTTCTGTTGAAAAGTCTACTTTTGAACTATCCGAAGATGGA 1022
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 964 ACCGTTGGAGCAAAACGCCTTTCTGTTGAAAAGTCTACTTTTGAACTAGCCGAAGATGGA 1023
Query 1023 ACCGGAGGCATGATCATAGACTCGGGCACGACTATCACGTATCTCGAGGAGACCGCGTTT 1082
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1024 ACCGGAGGTATGATCATAGACTCAGGCACGACCATCACGTATCTCGAGGAGACCGCGTTT 1083
Query 1083 AAGGTGTT-AAAGGAGGAGTTTACTTCTCGGATGAGTTTACCAGTCGATGACTCTGGATC 1141
|| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1084 AAAGTGTTGAAAG-AGGAGTTTACTTCTCGGATGAGTTTACCAGTAGATGACTCTGGATC 1142
Query 1142 AACGGGACTTGACTTGTGCTTCAAGTTACCTAATGCAGACAAGAATATTGCTGTTCCTAA 1201
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 1143 CACGGGACTTGACTTGTGCTTCAAGTTACCTGATGCTGCCAAGAATATTGCTGTTCCTAA 1202
Query 1202 GTTGATTTTTCATTTTAAAGGTGCGGATTTGGAGCTTCCCGGAGAGAATTACATGGTGGC 1261
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1203 GATGATTTTTCATTTTAAAGGTGCTGATTTGGAGCTTCCCGGAGAGAACTACATGGTGGC 1262
Query 1262 GGATTCAAGCACTGGCGTTTTGTGCTTGGCCATGGGAAGTTCTAATGGGATGTCTATTTT 1321
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1263 GGATTCAAGCACCGGCGTTTTGTGTTTGGCCATGGGAAGTTCTAATGGGATGTCTATTTT 1322
Query 1322 TGGAAATGTTCAGCAGCAAAATTTTAATGTACTTCATGATCTTGAGAAAGAAACAGTGAC 1381
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1323 CGGAAATGTTCAACAGCAGAATTTTAATGTACTTCATGATCTTGAGAAAGAAACGGTGTC 1382
Query 1382 ATTTGTTCCCACTGAATGTGGAAAATTGTAGATTTT-AATT-GTTTTTTCTTT 1432
||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1383 GTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTTTAATTTGTTTTTTTTTT 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5