BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936117
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03310.1 | Symbols: | unknown protein; Has 17 Blast hits to... 821 0.0
> AT2G03310.1 | Symbols: | unknown protein; Has 17 Blast hits
to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:1006256-1007183 REVERSE LENGTH=845
Length=845
Score = 821 bits (444), Expect = 0.0
Identities = 537/579 (93%), Gaps = 17/579 (3%)
Strand=Plus/Plus
Query 4 AGAACATTATCCAAATTATGAACAGAACAGAGGCAGAGCAAGAAGAAGAAGAATTCAGTG 63
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 78 AGAACATTATCCAAATTATGAACAGAGCAGAGGCAGAGC---AAGAAGAAGAATTCAGTG 134
Query 64 AATGGGTAG-TG--ATACAAACCTCACCCAAATCCCCACGAT-CTGACGCATCTACCCCT 119
||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 135 AATGGGTAGTTGTTATACAAACCTCACCCAAATCCCCACG-TACTGACGCATCTACCCCT 193
Query 120 CCAAACTCACCGATATTACAACCAAGCCATCGCCGTGAAAATCCAACGACCAACgatgat 179
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 194 CCAAACTCACCGATATTACAACCAAGCCACCGCCGTGAAAATCCAACGATCAAC------ 247
Query 180 gatgatgatgatgaAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGC 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ---GACGATGATGAAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGA 304
Query 240 GTGATTGACACTACCAAAAAGCGATTGATCAAGAACTCAGTGTGCTTCTTTCAGGCCGTC 299
|||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 305 GTGATTGAGACTACCAAGAAGCGATTAATCAAGAACTCAGTGTGCATCTTTCAGGCCGTC 364
Query 300 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 424
Query 360 GGAGGCTTCTCGTTGGTTTTGAGCCTTGTCTATGTGAAGCTCGTGAGGTGGTGGAGACGA 419
||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 425 GGAGGCTTCTCGTTGGTCTTGAGCCTTGTTTATGTGAAGCTCGTGAGATGGTGGAGACGG 484
Query 420 CTACATGAAGAGAAGCTGAGATTTCTCCTTCTTCTGCTCAGAGAGAAAGATCAGAAAATA 479
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 485 CTACATGAAGAGAAACTGAGATTTCTGCTTCTTCTCCTCAGAGAGAAAGATCAGAGAATA 544
Query 480 AAGGAACTAATGGTTGAAATTGGGAGATTGAACGAGTTGTTATTGTCAAGACGCAGAGTT 539
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 545 AAGGAACTTATGGTTGAAATTGGGAGATTGAACGAGTTGTTATCATCACGACGCAGAGTT 604
Query 540 CGAGTGGTTCGAATCGTCTGACGAGACGAatatatatat 578
||||||||||||||||| | ||||||||| | |||||||
Sbjct 605 CGAGTGGTTCGAATCGTGTAACGAGACGAGTGTATATAT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5