BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936117 Length=580 Score E Sequences producing significant alignments: (Bits) Value AT2G03310.1 | Symbols: | unknown protein; Has 17 Blast hits to... 821 0.0 > AT2G03310.1 | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1006256-1007183 REVERSE LENGTH=845 Length=845 Score = 821 bits (444), Expect = 0.0 Identities = 537/579 (93%), Gaps = 17/579 (3%) Strand=Plus/Plus Query 4 AGAACATTATCCAAATTATGAACAGAACAGAGGCAGAGCAAGAAGAAGAAGAATTCAGTG 63 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 78 AGAACATTATCCAAATTATGAACAGAGCAGAGGCAGAGC---AAGAAGAAGAATTCAGTG 134 Query 64 AATGGGTAG-TG--ATACAAACCTCACCCAAATCCCCACGAT-CTGACGCATCTACCCCT 119 ||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 135 AATGGGTAGTTGTTATACAAACCTCACCCAAATCCCCACG-TACTGACGCATCTACCCCT 193 Query 120 CCAAACTCACCGATATTACAACCAAGCCATCGCCGTGAAAATCCAACGACCAACgatgat 179 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 194 CCAAACTCACCGATATTACAACCAAGCCACCGCCGTGAAAATCCAACGATCAAC------ 247 Query 180 gatgatgatgatgaAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGC 239 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 ---GACGATGATGAAGATTCTGTTGTCCCCTCCACCGTGAATCTTTGGCTTCCGTGGCGA 304 Query 240 GTGATTGACACTACCAAAAAGCGATTGATCAAGAACTCAGTGTGCTTCTTTCAGGCCGTC 299 |||||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 305 GTGATTGAGACTACCAAGAAGCGATTAATCAAGAACTCAGTGTGCATCTTTCAGGCCGTC 364 Query 300 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GAAAGGGTGCGTTGTAGTTACCTAACTCGTAAAAGGGTATTTTGGTCATTAACAATCATT 424 Query 360 GGAGGCTTCTCGTTGGTTTTGAGCCTTGTCTATGTGAAGCTCGTGAGGTGGTGGAGACGA 419 ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 425 GGAGGCTTCTCGTTGGTCTTGAGCCTTGTTTATGTGAAGCTCGTGAGATGGTGGAGACGG 484 Query 420 CTACATGAAGAGAAGCTGAGATTTCTCCTTCTTCTGCTCAGAGAGAAAGATCAGAAAATA 479 |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct 485 CTACATGAAGAGAAACTGAGATTTCTGCTTCTTCTCCTCAGAGAGAAAGATCAGAGAATA 544 Query 480 AAGGAACTAATGGTTGAAATTGGGAGATTGAACGAGTTGTTATTGTCAAGACGCAGAGTT 539 |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 545 AAGGAACTTATGGTTGAAATTGGGAGATTGAACGAGTTGTTATCATCACGACGCAGAGTT 604 Query 540 CGAGTGGTTCGAATCGTCTGACGAGACGAatatatatat 578 ||||||||||||||||| | ||||||||| | ||||||| Sbjct 605 CGAGTGGTTCGAATCGTGTAACGAGACGAGTGTATATAT 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27879951585 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5