BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936118 Length=283 Score E Sequences producing significant alignments: (Bits) Value AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5... 339 1e-92 > AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277361-19279736 REVERSE LENGTH=1298 Length=1298 Score = 339 bits (183), Expect = 1e-92 Identities = 194/199 (97%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 57 CACACTCTGAT-T-AATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 114 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797 Query 115 TGAGAGAAGTGTCAACAGCGGAAGGGAAGTCATTGGCTGAAGCACAAGGTCTTTTCTTCA 174 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857 Query 175 TGGAGACATCGACTTTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 234 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917 Query 235 AGATATACAACATACTGAG 253 ||||||||||||||||||| Sbjct 918 AGATATACAACATACTGAG 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13019346991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5