BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936120

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20180.1 | Symbols:  | Ribosomal protein L36 | chr5:6810920-...   180    6e-45


> AT5G20180.1 | Symbols:  | Ribosomal protein L36 | chr5:6810920-6812146 
FORWARD LENGTH=636
Length=636

 Score =  180 bits (97),  Expect = 6e-45
 Identities = 161/189 (85%), Gaps = 16/189 (8%)
 Strand=Plus/Plus

Query  3    AATT-GCAGAGTGAGGAA-CCATGAAGGTGAGATCATATGTGAAGCAGATGTGTGAGTTT  60
            |||| ||||||||| ||| | |||||||||||||||| ||||||| ||||||||||||||
Sbjct  69   AATTCGCAGAGTGA-GAAGCAATGAAGGTGAGATCATCTGTGAAGAAGATGTGTGAGTTT  127

Query  61   TGTAAAACAGTGAAACGTCGAGGACGTGTCTATATTATCTTTTCTTCGGTTCTTCCATTC  120
            |||||||||||||||||||| |||||||| ||| |||| |   || |  |||  | || |
Sbjct  128  TGTAAAACAGTGAAACGTCGTGGACGTGTGTATGTTATATG--CT-C--TTC--CAAT-C  179

Query  121  CTAAGCACAAGCAAAGAAAGACAAGGGTTCAGCTCCTTTGCTTATGAAGGAATTATACCT  180
            |||||||||||||||||    ||||||||||| |||||||||||||||||||||| ||||
Sbjct  180  CTAAGCACAAGCAAAGA----CAAGGGTTCAGTTCCTTTGCTTATGAAGGAATTACACCT  235

Query  181  TTCCCGTTT  189
            | ||| |||
Sbjct  236  TCCCC-TTT  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10807566035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5