BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936128
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03390.1 | Symbols: | uvrB/uvrC motif-containing protein | ... 1700 0.0
> AT2G03390.1 | Symbols: | uvrB/uvrC motif-containing protein
| chr2:1030402-1032625 REVERSE LENGTH=1366
Length=1366
Score = 1700 bits (920), Expect = 0.0
Identities = 990/1023 (97%), Gaps = 7/1023 (1%)
Strand=Plus/Plus
Query 3 TCGGTCTTGATAAAAGAACATGGTTCAAAGTCAGTCGTTAAGCACATTAACAATCTGTGG 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCGGTCTTGATAAAATAAAATGGTTCAAAGTCAGTCGTTAAGCACATTAACAATCTGTGG 181
Query 63 AAGTGTAAAAGTTTCAAGCTTGTTGAGGAATCGTTTAAATTCA-TCGAAAGCTTCAAGCT 121
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 182 AAGTGTAAAAGTTTCAAGCTTGTTGAGGAATCGTTTAAATTCAGT-GAAAGCTTCAAGCT 240
Query 122 TGATCGGTGATCGATGTGTTTCGTGTCAGTTTTTGCGTAAATCACCGTCCTTTAGAAGTC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TGATCGGTGATCGATGTGTTTCGTGTCAGTTTTTGCGTAAATCACCGTCCTTTAGAAGCC 300
Query 182 ATTGGAAGTCAATAAAGCAAAGAAATTTGTTGAGGGTTGAAGCTAGATGGCCATTTCAAG 241
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGGAAGTCATTAAAGCAAAGAAATTTGTTGAGGGTTGAAGCTAGATGGCCATTTCAA- 359
Query 242 GTGGTGGTGGTGAACAAGGTTTAGACCCGAGCTCTGAGCGAAGCGAGAGTGCCAATGAAG 301
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 360 --GGAGGTGGTGAACAAGGTTTAGACCCGAGCTCTGAGAGAAGCGAGAGTGCTAATGAAG 417
Query 302 ATATATTGATCTTTTTCTTTCAGCTGGATTTGGCTACTCGTGTACAGTATGCAATGAATC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATATATTGATCTTTTTCTTTCAGCTGGATTTGGCTACTCGTGTACAGTATGCAATGAATC 477
Query 362 TGGAGCAGTACGATATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAAGAGGAGT 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGGAGCAGTACGACATTGCGCAACAACTAAGAGAAAAGCTAACTGAGGTGGAAGAGGAGT 537
Query 422 CGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAAGACAAGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGATAAGGCTGCAGGAAGGGAAAAGAGGGTCATCAGCTAAAAGTGAAGCTCAAGACAAGG 597
Query 482 GTATTAGTATTATAAGGCTACGTGCCGATCTCCAGAATGCCATTGACAGTGAGGATTACG 541
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 GTATTAGCATTATAAGGCTACGTGCAGATCTCCAGAATGCCATTGACAGTGAGGATTACG 657
Query 542 GTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTAGCTGTAT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTTGGCAGCTAAGTTACGAGATGAAATCTCAAAGCTTGAGGCAGAATCATTAGCTGTAT 717
Query 602 CTGCGAAAGCCTTGGCTTTTGA-AAATGCAGAGTATGCATTTCGCTTAGGACAGAAGCTT 660
|||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| |||
Sbjct 718 CTGCGAAAGCCTTGGCTTTTGAGAAA-GCAGAGTATGCATTTCGTTTGGGACAGAAACTT 776
Query 661 AGACACAAAACTTTTGGTTACCGGGCTGTAGTTTGTGGTATGGATCCAATTTGCTGTGAA 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 777 AGACACAAAACTTTTGGTTACCGGGCTGTAGTGTGTGGTATGGATCCAATTTGCAGTGAA 836
Query 721 TCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGCGGATCCAATCAGCCA 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 TCAAGCTCTTGGATGGAAGCTGCAGAGGTTGAAAAGTTACCTCGTGGATCCAATCAGCCA 896
Query 781 TTTTATCAGGTTCTAGTCGATGCTCGGACGCACCCAGATCTAGTAGTGGCATATGTTGCT 840
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 897 TTTTATCAGGTTCTAGTCGATGTTCGGACGCACCCAGATCTACTAGTGGCATATGTTGCT 956
Query 841 GAAGACAATCTATTAGCTCCCGAGAAACCCGACAAAGAAAGGTTTGATCATCCATACATT 900
||||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 957 GAAGACAATCTGTTAGCTCCTGAAAAACCCGATAAGGAAAGGTTTGATCATCCATACATT 1016
Query 901 TCTTTTCTCTACTATGGAGCCGACACAGCTGGAGATTTCATCCCTGTCAAACAATTGCGT 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCTTTTCTCTACTATGGAGCTGACACAGCTGGAGATTTCATCCCTGTCAAACAATTGCGT 1076
Query 961 GAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGAAGAAGATTAAAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1077 GAGAAGTACAACAGACCTCGGCATGAAGTTCCTTTTGATTCACAAGACGAAGATTAAGAT 1136
Query 1021 GAA 1023
|||
Sbjct 1137 GAA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5