BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936134
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03410.1 | Symbols: | Mo25 family protein | chr2:1033598-10... 1663 0.0
> AT2G03410.1 | Symbols: | Mo25 family protein | chr2:1033598-1036009
FORWARD LENGTH=2412
Length=2412
Score = 1663 bits (900), Expect = 0.0
Identities = 1017/1074 (95%), Gaps = 5/1074 (0%)
Strand=Plus/Plus
Query 1 ACCATGGCGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ACCATGGAGGAAGCACGAGAATGAAAGGTCTCTTCAAGAACAAATCACGTCTTCCTGGTG 349
Query 61 AAATCGTTCGTCAGACTCGAGATCTCATTGCTTTAGCCGAATCC---GAAGAAGAAATCG 117
||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||
Sbjct 350 AAATCGTACGTCAGACTCGAGATCTCATCGCTTTAGCGGAATCCGAAGAAGAAGAAACCG 409
Query 118 ATTCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAATTGTGTCGAAACATTAGTGATT 177
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 410 ATGCGAGAAACTCGAAAAGGTTAGGGATTTGTGCGGAGTTGTGTCGAAACATTAGAGATT 469
Query 178 TGAAATCGATTCTTTATGGTAATAGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTATGT 237
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 470 TGAAATCGATTCTTTATGGTAATGGTGAAGCTGAGCCTGTTCCTGAAGCTTGTCTTTTGT 529
Query 238 TAACTCAAGAGTTTTTCCGAGAAGATACGCTTCGTCCTTTGATCAAATCTATTCCAAAAC 297
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 530 TAACTCAAGAGTTTTTCCGAGCAGACACGCTTCGTCCTTTGATCAAATCTATACCAAAAC 589
Query 298 TTGATCTAGAAGCAAGAAAAGACGCGACGCAGATTGTTGCGAAT-TTGCAGAAACAACAA 356
|||| ||||||||||||||||||||||| |||||||| |||||| || ||||| ||||||
Sbjct 590 TTGACCTAGAAGCAAGAAAAGACGCGACACAGATTGTCGCGAATCTT-CAGAAGCAACAA 648
Query 357 GTCGAATCTCGACTCGTTGCTTCTGAATATCTTGAATCGAATTTAGATGTTATTGATTCG 416
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 649 GTCGAATTTCGACTCGTTGCTTCTGAATATCTTGAATCGAACTTAGATGTTATCGATTCG 708
Query 417 TTAGTCGAAGGTATCGATCATGATCACGAGTTGGCGTTGCATTATACAGGAATGCTTAAA 476
|||||||||||||||||||| || || ||| ||||||||||||| || ||||||||||||
Sbjct 709 TTAGTCGAAGGTATCGATCACGACCATGAGCTGGCGTTGCATTACACGGGAATGCTTAAA 768
Query 477 GAATGTGTGCGGCATCAGGTTGTTGCCAAGTACATACTCGAATCCAAGAATTTGGAGAAG 536
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 769 GAATGTGTGCGGCATCAGGTTGTTGCAAAGTACATACTCGAATCGAAGAATTTGGAGAAG 828
Query 537 TTTTTCGATTATGTTCAGCTTCCGTATTTTGATGTAGCTACCGATGCTAGCAAGATCTTT 596
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 829 TTTTTCGATTATGTTCAGCTTCCGTATTTCGATGTAGCTACCGATGCTAGCAAGATCTTC 888
Query 597 AGGGAGCTTTTGACGAGGCATAAATCGACTGTAGCTGAGTATCTTACCAAGAACTACGAG 656
|| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 889 AGAGAGCTTTTGACGAGGCATAAATCGACTGTAGCGGAGTATCTTGCGAAGAACTACGAA 948
Query 657 TGGTTTTTCGCAGAGTATAACACGAAGTTGTTGGAGAAAGGAAGCTACTTTACGAAGAGA 716
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 949 TGGTTTTTCGCAGAGTATAACACCAAGTTGTTGGAGAAAGGAAGCTATTTTACGAAGAGA 1008
Query 717 CAAGCTTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTT 776
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CAAGCGTCGAAATTGCTTGGAGATGTGTTGATGGATCGTTCGAATTCAGGTGTGATGGTA 1068
Query 777 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AAGTATGTGAGCAGTTTGGATAATTTGAGAATCATGATGAATCTTTTAAGAGAACCAACC 1128
Query 837 AAGAACATTCAGTTAGAAGCTTTTCATATCTTCAAGCTCTTTGTGGCGAACGAGAACAAA 896
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 1129 AAGAACATTCAGTTAGAAGCATTTCATATCTTTAAACTCTTTGTGGCAAACGAGAACAAA 1188
Query 897 CCAGAGGACATTGTGGCGATTCTCGTGGCGAATCGGAACAAGATTCTTCGTTTGTTTGCT 956
|| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1189 CCTGAGGATATCGTGGCGATTCTCGTGGCGAATCGGACCAAGATTCTTCGTTTGTTTGCT 1248
Query 957 GATTTGAAAGCTGAAAAAGAAGATGTAGGTTTTGAAACTGACAAATCATTGGTTATGAAT 1016
||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1249 GATTTGAAACCTGAGAAAGAAGATGTAGGTTTTGAAACTGATAAAGCATTGGTTATGAAT 1308
Query 1017 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAATAAAAA 1070
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1309 GAGATTGCTACACTTTCTCTTCTCGATATCAAAACCGCAGATCGATAAGAAAAA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5