BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936142
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03500.1 | Symbols: | Homeodomain-like superfamily protein ... 2071 0.0
> AT2G03500.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:1059710-1062410 FORWARD LENGTH=1666
Length=1666
Score = 2071 bits (1121), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 11/1328 (1%)
Strand=Plus/Plus
Query 23 atatGGCTTCTTCATCAGAACTAAGCTTGGATTGCAAGCCACAAAGCTACTCTATGCTTT 82
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ATATGGCGTCCTCATCAGAACTAAGCTTGGATTGCAAGCCACAAAGCTACTCTATGCTTT 274
Query 83 TGAAATCATTTGGTGATAACTTTCAGAGCGATCCAACTACACAAAAGCTCGAAGATCTTC 142
||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 275 TGAAATCCTTTGGAGATAACTTTCAGAGCGATCCAACCACACATAAGCTTGAAGATCTTC 334
Query 143 TTTCTCGCCTTGAACAAGAACGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCCCTTT 202
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 335 TCTCTCGCCTAGAACAAGAACGTCTCAAGATCGATGCCTTCAAACGCGAGCTTCCCCTTT 394
Query 203 GCATGCAACTCCTTAACAATGCTGTGGAAGTTTACAAACAACAACTAGAAGCATATAGAG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GCATGCAACTCCTTAACAATGCTGTGGAAGTTTACAAACAACAACTAGAAGCATATAGAG 454
Query 263 CAAATAGTAATAACAATAACCAAAGTGTTGCCACAAGACCAGTTCTTGAAGAGTTCATAC 322
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 455 CAAATAGTAATAACAATAACCAAAGTGTTGGTACAAGACCAGTTCTCGAAGAGTTCATAC 514
Query 323 CCTTAAGGAACCAACCCGAAAAAACAAACAA-A--GGAAGTAACTGGATGACGACTGCTC 379
|||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||
Sbjct 515 CCTTAAGGAACCAACCCGAAAAGACAAACAACAAAGGAAGTAATTGGATGACGACTGCTC 574
Query 380 AGCTTTGGAGCCAATCCGAAACCAAACCAAAAAACATTGATTCAACTACTGATCAATCTC 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGCTATGGAGCCAATCCGAAACCAAACCAAAAAACATTGATTCAACTACTGATCAATCTC 634
Query 440 TTCCCAAAGACGAGATTATTAGTAGTCCGAAACTCGGACATTTTGATGCAAAACAAAGAA 499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TTCCCAAAGACGAGATTAATAGTAGTCCGAAACTCGGACATTTTGATGCAAAACAAAGAA 694
Query 500 ATGGCAACGGTGCTTTTCTTCCCTTCTCTAAGGAACAATCTTTGCCTGAATTAGCTCTAT 559
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ATGGCAGCGGTGCTTTTCTTCCCTTCTCTAAGGAACAATCTTTGCCTGAATTAGCTCTAT 754
Query 560 CTACGGAGGTCAAGAGGGTGTCCCCGACCAACGAGCATACTAATGGCCAAGACGGTAATG 619
| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 755 CCACGGAGGTCAAGAGGGTCTCTCCGACCAACGAACATACTAATGGCCAAGACGGTAATG 814
Query 620 ATGAGAGCATGATCAACAATGataataacaataataataataataataataaCAATTCAA 679
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 815 ATGAGAGCATGATCAACAATGATAATAAC--TA-TAATAATAATAATAATAACAATTCGA 871
Query 680 ACAGCAATGGAGTTTCTTCTACAACAAGTCAAAGTAATAGAAAGGCACGACGTTGCTGGT 739
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 872 ACAGCAATGGAGTTTCTTCTACAACGAGTCAAAGTAATAGAAAGGCACGACGTTGCTGGT 931
Query 740 CGCCGGACTTGCACCGGAGATTTGTCCAAGCTCTTCAAATGCTTGGTGGTTCGCAAGTGG 799
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 932 CGCCGGACTTGCACCGGAGATTTGTCCAAGCTCTTCAAATGCTTGGTGGCTCGCAAGTGG 991
Query 800 CTACACCGAAACAAATAAGGGAACTTATGAAAGTTGATGGCCTGACCAATGATGAAGTCA 859
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 992 CTACACCTAAACAAATAAGGGAACTCATGAAAGTTGATGGTTTGACCAATGATGAAGTCA 1051
Query 860 AAAGCCATCTCCAGAAGTATCGGCTTCACACTAGAAGACCAAGCCCAAGCCCACAAACAT 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1052 AAAGCCATCTCCAGAAGTATCGGCTTCACACTAGAAGACCAAGCCCAAGCCCACAAACGT 1111
Query 920 CAGGTGGGCCAGGTCCACATTTGGTGGTCCTAGGTGGCATATGGGTTCCACCGGAGTACA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CAGGTGGGCCAGGTCCACATTTGGTGGTCCTAGGTGGCATATGGGTTCCACCGGAGTACA 1171
Query 980 CCACCGCACATGGTGGCACTCCGACTCTCTaccaccaccaagttcaccaccaccacacca 1039
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1172 CCTCCGCACATGGTGGCACTCCGACTCTCTACCACCACCAAGTCCACCACCACCATACCA 1231
Query 1040 ccacggcagggccgccaccaccacacTTTTGCTCCTCTCAAGAATTCTACACAACCCCAC 1099
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1232 ACACGGCAGGGCCGCCTCCACCACACTTTTGCTCCTCTCAAGAATTCTACACAACTCCAC 1291
Query 1100 CGCCTACGCAGCCGCTCCACCACCACCACTTTCAAACATTTAACGGCTCATCCGGTGGCG 1159
||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1292 CGCCTCCTCAGCCGCTCCACCACCACCACTTTCAAACGTTTAACGGTTCATCCGGTGGCA 1351
Query 1160 CCGCCTCCACCGATTCAACTCATCATCAGTTAACGGACAG-CGCCACCGAAGAAGGAAAG 1218
||||||| |||||||| |||||||||||| | |||||||| | |||| | ||||| |||
Sbjct 1352 CCGCCTCTACCGATTCTACTCATCATCAGGTGACGGACAGTC-CCACAGTTGAAGGGAAG 1410
Query 1219 TCGTCGGAGAGTGGTGGCGGAGAGAGAAAAGGGTTGGCTGCTCTTAGGGATGACGGTGAA 1278
|| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1411 TCACCGGAGAGTGGTGGTGGAGAGAGAAAAGGGTTGGCTGCTCTTAGGGAAGAATGTGAA 1470
Query 1279 GATCAGAGCAATATTAATGGAAGTGAAATAACTCTCAAATTCTaaaaaaaa-a--GATTC 1335
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1471 GATCACAGCAATATTAATGGAAGTGAAATAACTCTCAAATTCTAAAAAAAATAAAGATTC 1530
Query 1336 TTGATTAA 1343
||||||||
Sbjct 1531 TTGATTAA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5