BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936143
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03505.1 | Symbols: | Carbohydrate-binding X8 domain superf... 802 0.0
AT1G13830.1 | Symbols: | Carbohydrate-binding X8 domain superf... 239 2e-62
> AT2G03505.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr2:1064236-1065372 FORWARD LENGTH=866
Length=866
Score = 802 bits (434), Expect = 0.0
Identities = 507/541 (94%), Gaps = 10/541 (2%)
Strand=Plus/Plus
Query 1 AAAAACTTGCTTTGGTCCATCATGAGATTGCTTCTTGGTCTCTTGTTTCTCTTGGCTTTA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AAAAACTTGCTTTGGTCCATCATGAGATTGCTTCTTAGTCTCTTGTTTCTCTTGGCTTTA 120
Query 61 ACCACCTACTCAAGTGCAACTTATTGTCTATGTAGAGATGGTATTGAAGAGAAAGATCTT 120
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 121 ACCACCTACTCAAGTGCAACTTATTGTCTATGTAGAGATGGTGTTGGAGAGAAAGATCTT 180
Query 121 CAAACATCAATAGACTATGCATGTGGAGTTTTAAAAGATTGTAATCAAATTCATGACAAA 180
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 CAAACATCGATAGATTATGCATGTGGAGTTTTAAAAGATTGTAATCCTATTCATGAGAAA 240
Query 181 GGTCCTTGTTACCAACCAAACACTGTCAAGAGTCATTGTGATTGGGCGGTTAATACTTAT 240
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GGTCCTTGTTATCAACCAAACACCATCAAGAGTCATTGTGATTGGGCGGTTAATACTTAT 300
Query 241 TTCCAAAGATCTGGTCAAGTCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAGC 300
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCAAAGATTTGGTCAAATCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAGC 360
Query 301 CAAAATCCTCCTTCAACTGTGGTTACTGGTTGCATCTATCCTTCAAGTCCTGGAAGTGCA 360
||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 361 CAAAATCTTCCTTCAACTGTGGTTACTGGTTGCTTATATCCTTCAAGTCCAGGAAGTGCA 420
Query 361 GGGACAACTCCAACGACCGGAACTCCTTCAGGAACACA-ACCGTTTCCGGGACCTCCTGC 419
||||||||||| ||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 421 GGGACAACTCCCACGACAGGTACTCCTTCAGGAACACAGAC-GTTTCCGGGACCTCCTGC 479
Query 420 GTTTGGTCCGGTCGGAGTTTTTGACCCTTCAGGCAATA--G-TGCATC-GAGTTTGTTCA 475
||||||||||| ||||| |||||| ||||||||||||| | ||| || |||||||||||
Sbjct 480 GTTTGGTCCGGCCGGAGATTTTGATCCTTCAGGCAATAATGGTGC-TCCGAGTTTGTTCA 538
Query 476 TTTCAATCGCTCTCACACTTGGTTTCTCCGTC---ATTGCGTTTCTATAAAAGGCTAGTG 532
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TTTCAATCGCTCTCTCACTTGGTTTCTCCGTCGTCATTGCGTTTCTATAAAAGGCTAGTG 598
Query 533 A 533
|
Sbjct 599 A 599
> AT1G13830.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:4739873-4741038 REVERSE LENGTH=832
Length=832
Score = 239 bits (129), Expect = 2e-62
Identities = 270/338 (80%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 19 ATCATGAGATTGCTTCTTGGTCTCTTGTTTCTCTTGGCTTTAACCACCTAC-TCAAGTGC 77
||||||| | ||||||| ||||| ||| |||||||| | || |||| | | ||||||||
Sbjct 110 ATCATGAAAGTGCTTCTCGGTCTTTTGCTTCTCTTGTCCTTGACCA-ATTCTTCAAGTGC 168
Query 78 AACTTATTGTCTATGTAGAGATGGTATTGAAGAGAAAGATCTTCAAACATCAATAGACTA 137
|| ||| ||||| |||| |||||| || | ||| | ||| ||||||||||||||||||||
Sbjct 169 AATTTACTGTCTCTGTAAAGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTA 228
Query 138 TGCATGTGGAGTTTTAAAAGATTGTAATCAAATTCATGACAAAGGTCCTTGTTACCAACC 197
|||||||||| ||| |||||||||| || ||||| || ||| ||||||| |||||
Sbjct 229 TGCATGTGGAACCTTAGCTGATTGTAATCCTATACATGATAAGGGTACTTGTTATCAACC 288
Query 198 AAACACTGTCAAGAGTCATTGTGATTGGGCGGTTAATA-CTTATTTCCAAAGAT-CTGGT 255
| |||| |||| || || ||||||||||| || |||| || | ||||||| | | | |
Sbjct 289 AGACACCATCAAAAGCCACTGTGATTGGGCTGTGAATAGCT-ACTTCCAAA-ACGCAGCT 346
Query 256 CAAGTCTCTGGAAGCTGTAATTTCTCAGGAACTGCTACTACCAG-CCAAAATCCTCCTTC 314
|||||| |||||||||| |||||||| || ||||| ||||||| ||||| || |||||
Sbjct 347 CAAGTCCCTGGAAGCTGCAATTTCTCTGGCACTGCCACTACCAATCCAAAC-CCACCTTC 405
Query 315 -AACTGTGGTTACTGGTTGCATCTATCCTTCAAGTCCT 351
|| | ||| || ||||||||||||||| ||||| |||
Sbjct 406 CAATT-TGGCTAATGGTTGCATCTATCCGTCAAGCCCT 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5