BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936149
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03560.1 | Symbols: | F-box family protein with a domain of... 1035 0.0
> AT2G03560.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:1079639-1081376 FORWARD
LENGTH=1362
Length=1362
Score = 1035 bits (560), Expect = 0.0
Identities = 796/904 (88%), Gaps = 39/904 (4%)
Strand=Plus/Plus
Query 7 TATT-GTCCTTCTA-TGATGTTGTTCGATCCCGACGAAGAAAAGATTTATAGGGAA-CTC 63
|||| || |||| | ||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 228 TATTAGTACTTC-ATTGATGTTGTTCGATCCCGACGAAGACAAGATTTATA-AGAATCTT 285
Query 64 G-CAGGAGTTTCCGACAAGAGCTATTGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGC 122
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 286 GTC-GGAGTTTCTGACGAGAGCTATCGTTTGGCTAGCTCTGGAAACTGGCTCTTGATGGC 344
Query 123 AGATTCTCGTCTTGATTTCTATATTGTTAACTTGTTAACGGGCAAAAGGATCAATCTTCC 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 345 AGATTCTCGTCTTGATTTCTATATTGTTAACCTGTTAACGGGCAAAAGGATCAATCTTCC 404
Query 183 ACCAATGGAGTCTAAGATTCGTGGTGCACAAGTGAGATTTGAGCAAAGCAGGGA-ATGCA 241
||||||||||||||| |||||||||||||||| |||||||| |||||||| | | |
Sbjct 405 ACCAATGGAGTCTAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAGCAAATATTTTTA 464
Query 242 GCCA-TTGGGGATACCTTCT-CATCGACCAACGGT--GTATGTT--TAT-AGTGGAGAAA 294
| | | | || ||| || | | | || ||| || | | || ||| ||| ||||||
Sbjct 465 -CAAGTCGAGG-TACATT-TGCTTTGA-CAATTGTAATTCTATTCGTATAAGT-GAGAAA 519
Query 295 GAAATATTCCAATACAAAAGATCAGCTGTTCTGTGGATAAACGAGAGGACAGGG-GATTA 353
||| ||||| ||| ||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct 520 GAAGTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAGGAC-GGGAGATTA 578
Query 354 TTTCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGACTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 579 TTTCGTTGCTTGGATTTTTAATAAGCATTATTTGTTCACACACAAGAAAGGAGATGATTC 638
Query 414 GTGGTGTTGGCATAGGAAGTGGACTAAAGCTGGTTATTTGGATTTGGCTTATAAGAACAA 473
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 639 GTGGTGTTGGAATAGGAAGTGGACTAAACCTGGTTATTTGGATTTGGCTTATAAGAACAA 698
Query 474 CAAGCTTTATATCTGTACTACCGATAACTACATCAAGATTTTTGATTTCTCTGGAGATTT 533
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CAAGCTTTATATCTATAATACCGATAACTACATCAAGATTTTTGATTTCTCTGGAGATTA 758
Query 534 CCCTAAAGAAGAAATAAAAAATAACCCGTATCGA-AATCGTTCTTTTAACTACAATCGGG 592
|||||||||||| || ||||||||||||||| | |||||| || || | |||| |||||
Sbjct 759 CCCTAAAGAAGATATCGAAAATAACCCGTATC-ATAATCGTCCTCTTCAGTACATTCGGG 817
Query 593 GAGTAGGGGAAATCATTTGGGAG-AGGAGAATAGCGATTCAGAAATCGGGAGAGGTTTTG 651
|| ||||||| || ||| | || | ||||||||||||||||||||||||||||||||||
Sbjct 818 GACCAGGGGAAGTCCTTTTG-AGCAAGAGAATAGCGATTCAGAAATCGGGAGAGGTTTTG 876
Query 652 ATCATCTTGAGAGTTA-AAGCAGGAGATCA-TTCATGTTCGTTTTGGATCTTTAAAATGA 709
|||||||||||||||| || ||| || | || | || ||||||||||||||||||||
Sbjct 877 ATCATCTTGAGAGTTATAAA-AGGTTATAACTT--T-TT-GTTTTGGATCTTTAAAATGA 931
Query 710 ATCCTGAGAGTAGAAAATGGGAAAGAGTAGATTCTATTGGAGATGATGAGATGATTATCT 769
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATTTTGAGCGTAGAAAATGGGAAAGAGTAGATTCTATTGGAGATGATGAGATGATTATCT 991
Query 770 TCGGTCATGGTGCT-ACAATAAGAGCACCTGTTAAAGATGTTGGTGATGGAGTCAAGAGT 828
|||||||||| ||| ||| |||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 992 TCGGTCATGG-GCTTACAGTAAGAGCACCGGTTCAAGATATTGGTGATGGAGTCAAGAGT 1050
Query 829 GGTTCAATCTGGTTCGTTAAATTTGACCATC-GACCATTT-CGTGGTGTCTTCGATCTTG 886
||||||||||| |||||| ||| ||||| || | |||||| | ||||||||||||||||
Sbjct 1051 GGTTCAATCTGTTTCGTTGAATATGACCGTCAG-CCATTTTCC-GGTGTCTTCGATCTTG 1108
Query 887 CCAC 890
||||
Sbjct 1109 CCAC 1112
Score = 187 bits (101), Expect = 2e-46
Identities = 130/143 (91%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 880 GATCTTGCCACAGTCATCCCAATCACA-CCTTTTATTACCCGTGAGGCCGATGGTCACAG 938
||| || ||| |||||||| || |||| || |||||||||||||| | ||||||||||||
Sbjct 1139 GATGTT-CCA-AGTCATCCAAACCACACCCATTTATTACCCGTGATGTCGATGGTCACAG 1196
Query 939 AGTCGGTGTACGCAATCTTGATGTCCTCTCGGACGCAGAACT-CAAGTATCCAGACGCCT 997
| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1197 AATCGGTGTATGCAATCTTGATGTCCTCTCGGACGCA-AACTCCAAGTATCCAGACGCCT 1255
Query 998 TGAGCAGCAAGTCAACAGCATCT 1020
|||||||||||||||||||||||
Sbjct 1256 TGAGCAGCAAGTCAACAGCATCT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5