BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936150
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 459 4e-128
AT2G04840.1 | Symbols: | Protein of unknown function (DUF295) ... 222 5e-57
AT2G03560.1 | Symbols: | F-box family protein with a domain of... 207 1e-52
AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1... 187 2e-46
AT2G04830.1 | Symbols: | Protein of unknown function (DUF295) ... 169 7e-41
AT2G04810.1 | Symbols: | Protein of unknown function (DUF295) ... 167 2e-40
AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1... 165 9e-40
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 459 bits (248), Expect = 4e-128
Identities = 570/718 (79%), Gaps = 52/718 (7%)
Strand=Plus/Plus
Query 334 ATCTACCATCAATAGAGTCTCCAATTCGTGGTGCACAAGT-ACGATTTGAGCGAAGCGGT 392
|||| |||||||| |||||| ||||||| |||| | |||| | |||| |||| || |
Sbjct 383 ATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAAGTGA-GATTCGAGCAAAACCAC 441
Query 393 GAGTCA-AGATAC-ACGTGGGGACACTTTGTCGAGCCTTGTCGTAAGGATAATGTGTCGA 450
||| || ||| | || ||||||||||||||||| |||| |||||||| || ||||| |
Sbjct 442 GAG-CATGGATTCAAC-TGGGGACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTC-A 498
Query 451 AAGA-CATC-TTGCACTGCAAAAGATCAGGAGTTGTTCTGTGGATAAACGAGAGAACAGG 508
|| | | | | ||| | |||| | | ||| ||||||||||||| |||||||||||||
Sbjct 499 AAAATAACCATCACAC-GGGAAAG-T-A-GAGCTGTTCTGTGGATAGACGAGAGAACAGG 554
Query 509 GGATTATGTCGTTGCTTGGATTTTGAAAC-GGCATTACTTGTTCACATACAAGAAAGGAG 567
|||| ||| |||||||||||||| ||| | |||||||||| |||||||||||||||
Sbjct 555 AGATTTTGTGGTTGCTTGGATTTT-TAACTATCGTTACTTGTTCTCATACAAGAAAGGAG 613
Query 568 ATGATTCGTGGTGGAATTGGAATAAGGATTGGATTACCGG--TGCGAAAAATTTGGGTTA 625
|||||||||||||||| |||||||| |||||| || || || ||||| |||
Sbjct 614 ATGATTCGTGGTGGAACTGGAATAACCATTGGAATA-TGGAAAGC-TTGAATTTAAGTTT 671
Query 626 TTTGGATGTGGCTTATAAG-AACAGTAAGCTTTATCTCTACACCACCGATAACCACATC- 683
||||||| ||||||| || ||||| ||||||||| |||||| || | | ||||||
Sbjct 672 TTTGGATTTGGCTTA-CAGAAACAGCAAGCTTTATATCTACATTACTAAGAGTCACATCA 730
Query 684 AAGATTATCGATTTCTCTGGAGAT-TTCCCTA-AGGAAGAAATCGA-AAATAACCCGTAT 740
||| || | |||||||||||| || |||| | | |||| |||||| ||| |||||||||
Sbjct 731 AAG-TTGTTGATTTCTCTGGAAATGATCCC-ATA-GAAGTAATCGATAAA-AACCCGTAT 786
Query 741 CT-GGATCATCC-TTT-TA-ACTATGCTCCGCGTGGATGTGAAGTTAC-TT-CGAAGAGG 794
| ||| ||||| ||| | ||| | || | | ||| ||| || ||||||
Sbjct 787 -TGGGAACATCCGTTTCGATACT-T-AACC-AAAAAAGGGGAA--TACATTAATAAGAGG 840
Query 795 AGAATAGCCATTCAGAAATCAGGAGAGGTTTTGATCATCTTGA--AT-TTAGTACTAATT 851
|||||||| ||||||||||||||||| |||||||| ||||||| | |||| || ||
Sbjct 841 AGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCAC-AA-A 898
Query 852 GGT-GAAAG-CAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATGG 908
| | |||| ||| |||| ||||||||||||||||||||||||| |||| || ||||
Sbjct 899 GATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATGG 957
Query 909 GAAAGAGT-GCAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAAT 967
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 GAAAGAGTAG-AATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGAT 1016
Query 968 AAGAGCACCGGTTCAAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTC 1025
||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||
Sbjct 1017 AAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC 1074
> AT2G04840.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1697009-1698240 FORWARD LENGTH=1170
Length=1170
Score = 222 bits (120), Expect = 5e-57
Identities = 499/669 (75%), Gaps = 77/669 (12%)
Strand=Plus/Plus
Query 482 TGTTCTGTGGATAAACGAGAGAACAGGGGATTATGTCGTTGCTTGGATTTTGAAACGGCA 541
|||||| ||||||||||||| |||||| ||||||||||||||||||| || | || |||
Sbjct 480 TGTTCTATGGATAAACGAGACAACAGGAGATTATGTCGTTGCTTGGACATTCATACAGCA 539
Query 542 TTACTTGTTC-ACATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAATAAGGATTGGA 600
|||||||||| | |||||| | | ||| ||| || ||| || ||| || | |
Sbjct 540 TTACTTGTTCTTC-TACAAGTCA-G-GAT-ATTGGTCTTGG---TGTAAT-CTGAAT-CA 590
Query 601 TTACCGGTGCGAAAAATTTGGGTTAT-TTGGATGTGGCTTATAAGAACAGTAAGCTTTAT 659
|| || ||||| ||| |||| | || ||| |||| | | |||||| ||||||||||
Sbjct 591 -TA---ATGGGAAAAGTTT-GGTTGTGTTTGATATGGCATGTGAGAACAATAAGCTTTAT 645
Query 660 CTCTACACCA-CCGATAACCACATCAAGATTATCGATTTCTCTGGAGATT-TCCCTAAGG 717
|| |||| || | || | || |||| |||| | ||||||||||||| || | |||| ||
Sbjct 646 CTGTACA-CAGCTAATCATCATATCAGGATTTTTGATTTCTCTGGAGCTTAT-CCTATGG 703
Query 718 --AAG-AAATCGAAAATAACCCGTATCTGG--ATCATCCT-TTTAACTATGCTCCGCGTG 771
||| ||| || || ||||||||| ||| || || || |||||| | | | | |
Sbjct 704 AAAAGAAAACCG--AA-AACCCGTAT-TGGAAAT-AT-CTGTTTAAC-GCGGT-TGAG-G 754
Query 772 GA---TGTGAAGTTAC--TTCGAAGAGGAGAATAGCCATTCAG-AA--ATCAGGAGAGGT 823
| || ||| ||| || |||||||| |||||| |||||| || |||||| |||||
Sbjct 755 AACCGTGGGAA--TACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGT 812
Query 824 TTTGATCATCTTGA-ATTTAGTACTAATTG-GTGA--AAGC--A-A-ACTTTTGTTTTAC 875
|||||||||||||| ||| || || || | | |||| | | |||||||||||||
Sbjct 813 TTTGATCATCTTGAGCCTTA-AAC-AAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTAC 870
Query 876 ATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGTGCAATCTATTGGAGATGAT 935
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||||||
Sbjct 871 ATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGA- 929
Query 936 GAGATGTTGATCTTTGGTCATGGGGTTACAATAAG-AGCACCGGTTCAAGATGTTGGTGA 994
|| ||||| | |||||||| || ||||||||| | | | || ||||| |||||||
Sbjct 930 GA--TGTTGGTTTTTGGTCAAGGTGTTACAATACCTA-CTGCTCTTAAAGATCTTGGTGA 986
Query 995 CGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGATAGTGGTCTT-CGGG--CA----G 1047
||||||||||||| ||| |||| ||||||||| | || |||| | | || |
Sbjct 987 TGGAATCAAGAGTGATTCAATCTATTTCGTCGATAA-AGACGTCTGGCCAGATCATCAAG 1045
Query 1048 A-C-T-ATCGTTGT-TATTCAGA-TTGCGGTATCTTTGATATTGCCACAAGTA-GAATTA 1101
| | | ||||| || | ||| || ||||||| |||| ||||||||||||||| || | |
Sbjct 1046 ATCATGATCGTCGTGT-TTC-GAATTGCGGTGTCTTCAATATTGCCACAAGTAAGA-TCA 1102
Query 1102 AATGGCCTA 1110
|||||||||
Sbjct 1103 AATGGCCTA 1111
> AT2G03560.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:1079639-1081376 FORWARD
LENGTH=1362
Length=1362
Score = 207 bits (112), Expect = 1e-52
Identities = 167/193 (87%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 21 ATG-AGAGAAGAGGAGAGC-CAAAAAGTCTCTGAAAATCACGATTGGTCCAATCTTTGTC 78
||| ||| ||||||||| | |||||| | ||||| ||||| ||||||||||| |||||||
Sbjct 22 ATGAAGA-AAGAGGAGA-CACAAAAAATGTCTGAGAATCATGATTGGTCCAAGCTTTGTC 79
Query 79 CCGATCTTTTGCGAAAGATCATCGAAAGCTTGAGCTCTATTGATTATTACAGAGCAAAAA 138
| ||| ||||| |||||||||||||||||||||||||| | |||| |||| |||||||||
Sbjct 80 CTGATATTTTGAGAAAGATCATCGAAAGCTTGAGCTCTCTAGATTTTTACCGAGCAAAAA 139
Query 139 TTGTTTGCTCAGATTGGTA-TGGCGTTTGGAAAACATGTGTAAAGCGACGTCTATGTCCA 197
||||||||||||||||||| | ||||||||||||||| |||||||| | ||| |||||
Sbjct 140 TTGTTTGCTCAGATTGGTACTC-CGTTTGGAAAACATGCGTAAAGCGGCCTCTGCGTCCA 198
Query 198 TGGAGGATCGTAT 210
||| ||||| |||
Sbjct 199 TGGCGGATCATAT 211
> AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1093264-1094481
FORWARD LENGTH=435
Length=435
Score = 187 bits (101), Expect = 2e-46
Identities = 203/251 (81%), Gaps = 12/251 (5%)
Strand=Plus/Plus
Query 147 TCA-GATTGGTATGGCGTTTGGAAAACATGTGT-AAAGCGACGTCTATGTCCATGGAGGA 204
||| ||||||||| ||||||||||||||| || ||| || | ||| | ||||||| |||
Sbjct 48 TCACGATTGGTATTTCGTTTGGAAAACATGCGTGAAA-CGGCCTCTGTATCCATGGCGGA 106
Query 205 TCGTATGC--CAAT-ATGATTCTTATAAGTTT-TACGATCCCGGTGAAGACGAGATTTAC 260
|| ||| | | || ||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct 107 TCATATACTACGATGATGATTCTT-CCAGTTTGTTTGATCCCGGTGAAGACAAGATTTAC 165
Query 261 ACGCCACAA-TACGTTGGACTCTCTGACAATAGCTATTATATGGCTAACTCCGGAAATTG 319
| || || | | | ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 166 GGGACAAAACT-CCTCGGACTCTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTG 224
Query 320 GCTATTGATGATCAATCTACCATCAATAGAGTC-TCCAATTCGTGGTGCACAAGTACGAT 378
||| |||||||||||||| || ||||| ||||| || | |||| |||| | || || |||
Sbjct 225 GCTCTTGATGATCAATCTTCCGTCAATGGAGTCGTC-AGTTCGCGGTGGAAAAATAAGAT 283
Query 379 TTGAGCGAAGC 389
| |||| ||||
Sbjct 284 TCGAGCCAAGC 294
Score = 75.0 bits (40), Expect = 2e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 542 TTACTTGTTCACATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAAT 590
||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 347 TTATTTGTTCACATACAAGAAAGGAGATGATTCTTGGTGGAACTGGAAT 395
> AT2G04830.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1695355-1695856 FORWARD LENGTH=502
Length=502
Score = 169 bits (91), Expect = 7e-41
Identities = 151/179 (84%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 854 TGAA-AGCAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAA 912
|||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 46 TGAAGAG-AAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAA 104
Query 913 GAGTGCAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAATAAGAG 972
|||| | |||||||||||||| || ||||||| ||||||| |||||||||| ||
Sbjct 105 GAGTTTACTCTATTGGAGATGA-GA--TGTTGATTTTTGGTCGTGGGGTTACAGTACCT- 160
Query 973 CAC-CGGTTCAAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGA 1030
| | | || ||||| ||||| ||||||||||||||| ||| |||| ||||||||||||
Sbjct 161 CTCGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGA 219
> AT2G04810.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1688773-1689966 FORWARD LENGTH=1194
Length=1194
Score = 167 bits (90), Expect = 2e-40
Identities = 581/801 (73%), Gaps = 101/801 (13%)
Strand=Plus/Plus
Query 411 GGACACTTTGTCGAGCCTTGTCGTAAGGAT-A-AT-GTGTCGAAAGAC-AT-----C-TT 460
||| |||| |||| ||||| |||||||||| | || ||| || | ||| || | ||
Sbjct 445 GGATACTTGGTCGGGCCTTCTCGTAAGGATGATATAGTGCCGTATGACTATGAAGCCGTT 504
Query 461 GCACTGCAAAAGATCAGGAGTTGTTCTGTGGATAAACGAGAGAACAGGGGATTATGTC-G 519
| | || |||| |||| || |||||||||| || |||||| |||||| ||||||| | |
Sbjct 505 G-AATGGAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGAGATTATG-CAG 562
Query 520 TTGCTTGGA-TTTTGAAACGGCATTACTTGTTCACATACA-AGAAAGGAGATGATTCGTG 577
||||||||| |||| | || || ||||||||| |||||| | ||||||||| |||| ||
Sbjct 563 TTGCTTGGACTTTT-ATGCGACAATACTTGTTCTCATACATA-AAAGGAGATTATTCTTG 620
Query 578 GTGGAAT-TGGAATAAGGATTGGATTACCGGTGCGAAAAATTTGGGTTAT-TTGGATGTG 635
||| ||| | |||| | | | | || ||||| ||| |||| | || ||| ||
Sbjct 621 GTGTAATCT-GAAT---CA-T--A--A----TGGGAAAAGTTT-GGTTTTGTTTGATATG 666
Query 636 GCTTATAAGAACAGTAAGCTTTATCTCTACACCACCGATAACCACATCAAGATTATCGAT 695
|||| | |||||| |||||||||| | | || | ||| | |||||||||||| || ||
Sbjct 667 GCTTGTGAGAACAATAAGCTTTATTTGTTGACAATGGATCATCACATCAAGATTTTCAAT 726
Query 696 TTCTCTGGAGATTTCCCT-A-AGGAAGAAATCGAAAATAACCCGTATCTGGATCATCCTT 753
|||| ||||||||| | | ||| || || | || |||| ||||| | | | |
Sbjct 727 TTCTATGGAGATTT-TTTAACAGG-AG-AA-C---AA-AACCTGTATC-CGTTTA-AC-- 774
Query 754 TTAACT-ATGCTCCGCGT-GGATGTGAAGTTACTTCGAAGAGG-AGAATAGCCATTCAGA 810
|| | | | | | ||| ||| | | | | || ||||||| || |||| |||| ||
Sbjct 775 TTCGTTGAGGAT-C-CGTCGGA-AT-ACG-T--TTGGAAGAGGAAG-ATAGTGATTCGGA 826
Query 811 AATCAGGAGAGGTTTTGATCA-TCTTGA-ATT-TAGTACTAATTG----GTGAA-AGCAA 862
|||||||||||| |||| | |||||| || | | || || |||| || ||
Sbjct 827 GATCAGGAGAGGTACTGAT-AGTCTTGAGCTTGAAAAAAAAAGTGCAAAATGAAGAG-AA 884
Query 863 ACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGTGCAATC 922
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 885 ACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTG 944
Query 923 TATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA-TAAGAGCACCGGTTC 981
|||||||||||| || ||||||| ||||||| |||||||||| | || | ||
Sbjct 945 TATTGGAGATGA-GA--TGTTGATTTTTGGTCGTGGGGTTACAGCTCTT-GCTC---TTG 997
Query 982 AAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGAT-A-GT--GGT 1037
||||| ||| ||| || || |||||| ||| |||| |||||||| ||| | || ||
Sbjct 998 AAGATCTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGTCGGCGAAGATGTTTGGC 1057
Query 1038 C---T--TCGGG--CA-GA-CTATCGTTGTTATTCAGATTGCGGTATCTTTGATATTGCC 1088
| | || | || || | ||||| ||| | || |||||||| |||| |||||||||
Sbjct 1058 CAGATCATCAAGAACATGAGC-ATCGT-GTT-T-CAAATTGCGGTTTCTTCGATATTGCC 1113
Query 1089 ACAAGTA-GAATTAAATGGCCTAAGCAATT-TCATTGCCTT-ATGGAT-AAAAGTCATTG 1144
||||||| || | ||||||||||| || | | |||| || || || |||| ||| ||
Sbjct 1114 ACAAGTAAGA-TCGAATGGCCTAAGAAAATCT-ATTGT-TTCATTAATCAAAA-TCAGTG 1169
Query 1145 GTTTGCTCCAGGATTTGCTTA 1165
||||| | ||| |||||||
Sbjct 1170 GTTTGTTGGGGGAGTTGCTTA 1190
> AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1100202
FORWARD LENGTH=651
Length=651
Score = 165 bits (89), Expect = 9e-40
Identities = 197/246 (80%), Gaps = 20/246 (8%)
Strand=Plus/Plus
Query 930 GATG-ATGAGATGTTGATCTTTGGTCATGGGGTTACAATAAGAGCACCGGTTCAAGATGT 988
|||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 417 GATGAATGAGATGTTGATCTTTGGTCATGGGGTTACAATGAGAGCACAAGTTCATGATGT 476
Query 989 TGGTGACGGAATCAAGAGTGG-TTCTATCTTTTTCGTCGACGATAGTGGTCTTCGGGCAG 1047
|||||| ||||||||||| || ||| |||| |||||| || ||| | |||| || | |
Sbjct 477 TGGTGATGGAATCAAGAG-GGATTCAATCTGTTTCGTTGAAGAT-GA--TCTTTGGCCGG 532
Query 1048 ACTATCGTT-GTTATTCAGATTGCGGTATCTTTGATATTGCCACAAGTAGAATTAA-ATG 1105
| | | | | || |||| ||||||||||||| || |||||||||||||||| || |||
Sbjct 533 ATTTT-GATCGTCCTTCAAATTGCGGTATCTTCAATCTTGCCACAAGTAGAAT-AACATG 590
Query 1106 GCCTAAGCA-ATTTCATTGCCTTA--TGGAT-AAAAGTCATTGGTTTGCT-CCAGGATTT 1160
||||||| | || | || ||| | ||| |||| || |||||| || |||||||||
Sbjct 591 GCCTAAG-AGATA-CGGTGT-TTACATAGATCAAAAA-CAATGGTTT-CTTCCAGGATTT 645
Query 1161 GCTTAG 1166
||||||
Sbjct 646 GCTTAG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5