BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936152
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 412 3e-114
AT2G04840.1 | Symbols: | Protein of unknown function (DUF295) ... 178 1e-43
AT2G04830.1 | Symbols: | Protein of unknown function (DUF295) ... 132 9e-30
AT2G04810.1 | Symbols: | Protein of unknown function (DUF295) ... 119 7e-26
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 412 bits (223), Expect = 3e-114
Identities = 466/576 (81%), Gaps = 45/576 (8%)
Strand=Plus/Plus
Query 617 AGCTGTTCTGTGGATAAACGAGAAG-ACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
|||||||||||||||| ||||| || || || |||| ||||||||||||||||||| |||
Sbjct 525 AGCTGTTCTGTGGATAGACGAG-AGAACAGGAGATTTTGTGGTTGCTTGGATTTTT-AAC 582
Query 676 -AGCATTACTTGTTCACATACAAGAAAGGAGATGAATCATGGTGGAACTGGAATAATAAC 734
| | |||||||||| ||||||||||||||||||| || ||||||||||||||||| |
Sbjct 583 TATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCAT 642
Query 735 TGGAAAT-TCGGTCAAGGACGCGTAAATTTGGGTTATTTGGATTTGGCTTATGA-AAACA 792
||| ||| | || || | || | ||||| ||| ||||||||||||||| | |||||
Sbjct 643 TGG-AATAT-GG--AA--A-GCTTGAATTTAAGTTTTTTGGATTTGGCTTA-CAGAAACA 694
Query 793 GCAAGCTTTATCTCTATACTACCGATG-GTCACATC-AAGATTATCAATTTCTCTGGAGA 850
||||||||||| |||| | || | | | |||||||| ||| || | ||||||||||| |
Sbjct 695 GCAAGCTTTATATCTACATTA-CTAAGAGTCACATCAAAG-TTGTTGATTTCTCTGGAAA 752
Query 851 T-TTCCCTA-AGGAAGAAATCGA-AAATAACCCGTATCT-GGATCATCC-TTT-TA-ACT 903
| |||| | | |||| |||||| ||| ||||||||| | ||| ||||| ||| | |||
Sbjct 753 TGATCCC-ATA-GAAGTAATCGATAAA-AACCCGTAT-TGGGAACATCCGTTTCGATACT 808
Query 904 ATGCTCCGCATGGATTGGAACT-TATTTCGAGGAGGAGAATAGCCATTCAGAAATCAGGA 962
| || | | |||| | ||| | |||||||||||| |||||||||||||||
Sbjct 809 -T-AACC-AAAAAAGGGGAA-TACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGA 864
Query 963 GAGGTTTTGATCATCGTGAGTTTATTAGAAGTACGAATTGAT-GAAAGAG-CACTTTTGT 1020
|| |||||||| ||| ||||| |||| || || || ||| |||||| | |||| |
Sbjct 865 GACGTTTTGATTATCTTGAGTGTATT---AGCAC-AA-AGATCAAAAGAGAAAGTTTTAT 919
Query 1021 TTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATGGGAAAGAG-AGCATTCTATTGG 1078
|||||||||||||||||||||||| |||| || ||||||||||| || | ||||||||
Sbjct 920 TTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATGGGAAAGAGTAG-AATCTATTGG 977
Query 1079 AGATGATGAGATGATAATATTTGGTCATGGGGTTACAATAAGAGCACCGGTTCAAGATGT 1138
||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 978 AGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGTTCAAGATGT 1037
Query 1139 TGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
||||||||||||||||| ||||||||| ||||||||
Sbjct 1038 TGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGT 1073
> AT2G04840.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1697009-1698240 FORWARD LENGTH=1170
Length=1170
Score = 178 bits (96), Expect = 1e-43
Identities = 432/583 (74%), Gaps = 68/583 (12%)
Strand=Plus/Plus
Query 617 AGCTGTTCTGTGGATAAACGAGA-AGACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
||||||||| ||||||||||||| | || || |||||||| |||||||||| || | ||
Sbjct 477 AGCTGTTCTATGGATAAACGAGACA-ACAGGAGATTATGTCGTTGCTTGGACATTCATAC 535
Query 676 AGCATTACTTGTTC-ACATACAAGAAAGGAGATGAATCATGGTGGAAC-TGGAATAATAA 733
|||||||||||||| | |||||| | | ||| || |||| | ||| ||||
Sbjct 536 AGCATTACTTGTTCTTC-TACAAGTCA-G-GAT--AT--TGGT----CTTGGTGTAAT-- 582
Query 734 CTGGAAATTCGGTCAAGGACGCGTAAA-TTTGGGTTAT-TTGGATTTGGCTTATGAAAAC 791
|| | || || | || | | | ||| ||| |||| | || ||| |||| | ||| |||
Sbjct 583 CT-G-AA-TC-AT-AATG--G-GAAAAGTTT-GGTTGTGTTTGATATGGCATGTGAGAAC 633
Query 792 AGCAAGCTTTATCTCTATACTA-CCGATGGTCACATCAAGATTATCAATTTCTCTGGAGA 850
| ||||||||||| || || | | || ||| |||| |||| | ||||||||||||
Sbjct 634 AATAAGCTTTATCTGTACAC-AGCTAATCATCATATCAGGATTTTTGATTTCTCTGGAGC 692
Query 851 TT-TCCCTAAGG--AAG-AAATCGAAAATAACCCGTATCTGG--ATCATCCT-TTTAACT 903
|| | |||| || ||| ||| || || ||||||||| ||| || || || ||||||
Sbjct 693 TTAT-CCTATGGAAAAGAAAACCG--AA-AACCCGTAT-TGGAAAT-AT-CTGTTTAACG 745
Query 904 ATGCT-CCGCATGGATTGGAACTTA--TTTCGAGGAGGAGAATAGCCATTCAG-AA--AT 957
| | | | | | |||| || ||| || ||||| |||||| |||||| || ||
Sbjct 746 CGGTTGAGGAACCG-TGGGAA--TACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCAT 802
Query 958 CAGGAGAGGTTTTGATCATCGTGAG-TTTATTAGAAGTACGAATTGATGAA--AGAG-CA 1013
|||| ||||||||||||||| |||| ||| | |||| | || | ||| |||| |
Sbjct 803 CAGGTGAGGTTTTGATCATCTTGAGCCTTA-AACAAGT--G-TTTTACGAAGCAGAGAGA 858
Query 1014 CTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGAGCATTCT 1073
|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 859 CTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCT 918
Query 1074 ATTGGAGATGATGA-GATGATAATATTTGGTCATGGGGTTACAATAAG-AGCACCGGTTC 1131
|||||||||| || | || | | |||||||| || ||||||||| | | | ||
Sbjct 919 CTTGGAGATGA-GATGTTGGT--T-TTTGGTCAAGGTGTTACAATACCTA-CTGCTCTTA 973
Query 1132 AAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
||||| |||||||||||||||||| || |||||||| ||||||
Sbjct 974 AAGATCTTGGTGATGGAATCAAGAGTGATTCAATCTATTTCGT 1016
> AT2G04830.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1695355-1695856 FORWARD LENGTH=502
Length=502
Score = 132 bits (71), Expect = 9e-30
Identities = 142/175 (81%), Gaps = 9/175 (5%)
Strand=Plus/Plus
Query 1003 ATGAAAGAG-CACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAA 1061
||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 45 ATG-AAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAA 103
Query 1062 AGAGAGCATTCTATTGGAGATGATGA-GATGATAATATTTGGTCATGGGGTTACAATAAG 1120
|||| | |||||||||||||| || | |||| | ||||||| |||||||||| ||
Sbjct 104 AGAGTTTACTCTATTGGAGATGA-GATGTTGAT--T-TTTGGTCGTGGGGTTACAGTACC 159
Query 1121 AGCAC-CGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
| | | || ||||| ||||| | |||||||||| || |||||||| ||||||
Sbjct 160 T-CTCGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGT 213
> AT2G04810.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1688773-1689966 FORWARD LENGTH=1194
Length=1194
Score = 119 bits (64), Expect = 7e-26
Identities = 420/578 (73%), Gaps = 79/578 (14%)
Strand=Plus/Plus
Query 617 AGCTGTTCTGTGGATAAACGAGA-AGACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
||||||||||||| || |||||| | || || ||||||| |||||||||| ||||| |
Sbjct 522 AGCTGTTCTGTGGGTAGACGAGACA-ACAGGAGATTATGCAGTTGCTTGGACTTTTATGC 580
Query 676 AG-CATTACTTGTTCACATACA-AGAAAGGAGATGAATCATGGTGGAACTGGAATAATAA 733
| || ||||||||| |||||| | ||||||||| | || | ||| | | ||||
Sbjct 581 -GACAATACTTGTTCTCATACATA-AAAGGAGATTATTC-T--TGG---T-G--TAAT-- 627
Query 734 CTGGAAATTCGGTCAAGGACGCGTAAA-TTTGGGTTAT-TTGGATTTGGCTTATGAAAAC 791
|| | || || | || | | | ||| ||| |||| | || ||| |||||| ||| |||
Sbjct 628 CT-G-AA-TC-AT-AATG--G-GAAAAGTTT-GGTTTTGTTTGATATGGCTTGTGAGAAC 678
Query 792 AGCAAGCTTTATCTCTAT-ACTACCGATGGTCACATCAAGATTATCAATTTCTCTGGAGA 850
| ||||||||| | | | || | ||| ||||||||||||| ||||||||| ||||||
Sbjct 679 AATAAGCTTTATTTGT-TGACAATGGATCATCACATCAAGATTTTCAATTTCTATGGAGA 737
Query 851 TTTCCCT-A-AGGAAGAAATCGAAAATAACCCGTATCTGGATCATCCTTTTAACTAT-GC 907
||| | | ||| || || | || || | || | | |||| ||||||| | |
Sbjct 738 TTT-TTTAACAGG-AG-AA-C---AA-AA--C----CT-G-T-ATCCGTTTAACT-TCGT 779
Query 908 TCCGCAT-GGATTGGAACTTA--TTTCGAGGAGG-AGAATAGCCATTCAGAAATCAGGAG 963
| | || | | |||| || ||| || |||| || |||| |||| || ||||||||
Sbjct 780 TGAGGATCCG-TCGGAA--TACGTTTGGAAGAGGAAG-ATAGTGATTCGGAGATCAGGAG 835
Query 964 AGGTTTTGATCA-TCGTGAG-TT--TATTAGAAGTACGAATTGATGAAAGAG-CACTTTT 1018
|||| |||| | || |||| || | | |||| | || ||| ||||| ||||||
Sbjct 836 AGGTACTGAT-AGTCTTGAGCTTGAAAAAAAAAGTGC-AA--AATG-AAGAGAAACTTTT 890
Query 1019 GTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGAGCATTCTATTGG 1078
||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||
Sbjct 891 GTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGG 950
Query 1079 AGATGATGA-GATGATAATATTTGGTCATGGGGTTACAA-TAAGAGCACCGGTTCAAGAT 1136
|||||| || | |||| | ||||||| |||||||||| | || | || |||||
Sbjct 951 AGATGA-GATGTTGAT--T-TTTGGTCGTGGGGTTACAGCTCTT-GCTC---TTGAAGAT 1002
Query 1137 GTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
||| |||||| || |||| | |||||||| ||||||
Sbjct 1003 CTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5