BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936155
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03590.1 | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:... 1083 0.0
AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-... 972 0.0
> AT2G03590.1 | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:1094757-1096968
FORWARD LENGTH=1802
Length=1802
Score = 1083 bits (586), Expect = 0.0
Identities = 782/876 (89%), Gaps = 16/876 (2%)
Strand=Plus/Plus
Query 258 GCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAGTCACTGAAG 317
||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 650 GCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAGTTACTGAAG 709
Query 318 TCATCACAGCTAGTATCGCGGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 377
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TCATCACAGCTAGTATCACTGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 769
Query 378 GAATTAATAGAGCTGAGGTCCTTTTTCCGGGGGTCGCTTGTTTCTTGATCGCTGTTT-TC 436
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 770 GAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGT- 828
Query 437 TTCGGTTCAGCTGTTCATAAATCAAATGCAGCTGATAACAAATCTAAACTCCAAGATTTC 496
|||||||| |||||||||||||| ||||| |||||||||||| | ||||||||| |||||
Sbjct 829 TTCGGTTCCGCTGTTCATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTC 888
Query 497 AAAAGTTTAGAGACTGCTTCTTCCTTCAAAATGGAGACAA-GTC--CTA-C-A------A 545
||||||||||||||| ||||||||||| ||||||| |||| || | | | | |
Sbjct 889 AAAAGTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGGTTA 948
Query 546 AC-GAAGGAAAAGCAAAAGTAGGGACTGCAGATTTTCTTATTGAGCTTGAGAAACAAAGA 604
|| |||| ||||| |||| ||||||||||| |||||| || ||||||||||| ||||||
Sbjct 949 ACAAAAGGGAAAGCGAAAGAAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGA 1008
Query 605 GCCATAAAGGTTTTTGGGAAAAGCACGATAATTGGACTGGCGATAACATTCTTTGCCGGT 664
|| |||||||| ||||| |||||||| ||||| ||| ||| |||||| ||||||||||||
Sbjct 1009 GCTATAAAGGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT 1068
Query 665 ATCTG-TATCTCTCTAATCTCACCTGCAGTCAGCTTAGCGACAAACGATCAATGGCACAC 723
||||| | | ||||| ||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1069 ATCTGCT-TTTCTCTGTTCTCACCTGCATTCAACTTAGCAACAAACGATCAATGGCACAC 1127
Query 724 TTTGAAACATGGAGTTCCAAAACTGAATGTGTACACTGCCTTCTTCTACTTCTCAATCTC 783
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1128 ATTAAAACATGGAGTTCCAAAACTAAATGTGTACACTGCCTTCTTCTACTTCTCCATCTC 1187
Query 784 TTCATTTGGAGTTGGTATGATACTAAACATCATATTTCTCTATTGGCCTATACTTGGTCT 843
| |||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1188 TGCATTTGTAGTTGCTCTGATACTTAACATCAGATTTCTCTATTGGCCTATACTTGGTCT 1247
Query 844 GCCAAGATCATCTTTCATGGCTTACCTAAATGACTGGAACGGTCGAGGCTGGTCTTTCTT 903
|||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1248 CCCAAGATCTTCTTTCAAGGCTTATTTGAATGACTGGAACGGTCGAGGCTGGTCTTTCTT 1307
Query 904 AGCTGGATTTCTCTGTGGATTTGGCAATGGTCTTCAGTTCATGGGCGGTCAAGCCGCTGG 963
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1308 GGCTGGATTTCTATGTGGATTTGGCAATGGTCTTCAGTTCATGGGTGGTCAAGCCGCAGG 1367
Query 964 TTATGCAGCTGCAGGCGCTGTTCAGGCACTTCTGCTTGTGAGCACATTTTGGGGGATACT 1023
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1368 CTATGCAGCTGCAGACGCTGTTCAGGCACTTCCACTTGTGAGTACATTTTGGGGGATATT 1427
Query 1024 GCTATTTGGAGAATACAAAAGATCATCAAGAAAAACATATATACTTCTTATCAGTATGCT 1083
| | ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1428 GTTGTTTGGAGAATATAGAAGATCATCAAGAAAAACATATACACTTCTCATCAGTATGCT 1487
Query 1084 TTTTATGTTCATAGTTGCAGTCGCGGTTCTGATGGC 1119
| ||||||||||||| || ||||||||||| |||||
Sbjct 1488 TCTTATGTTCATAGTCGCTGTCGCGGTTCTTATGGC 1523
Score = 326 bits (176), Expect = 4e-88
Identities = 219/240 (91%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 20 AAA-ATGTATGTGATAGAGAGCAAAGGAGGAGCAATCACTTGTATTCTCTTCGCTCTGCT 78
||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||| ||
Sbjct 369 AAAGATGTATATGATAGAGAGCAAAGGAGGAGCAATTGCATGTATGCTCTTGGCTCTTCT 428
Query 79 CTTCTTGGGGACATGCCCAGCAATCATGACTCTAACCGAAAGACGCGGTCGACTTCCTCA 138
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGGTCGACTTCCTCA 488
Query 139 ACACACTTATCTTGACTACACACTCACAAACCTGTTAGCTGCTGTAATCATAGCGTTTAC 198
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 489 ACACACTTATCTTGACTACACACTCACAAATCTGTTAGCTGCAGTGATCATAGCGTTGAC 548
Query 199 ACTAGGCGAGATAAGTCCAAGCAGACCAAATTTCATCACACAGCTTTCTCAAGATAATTG 258
|||||| || ||| |||| ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 549 ACTAGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAAGATAATTG 608
> AT2G03600.4 | Symbols: UPS3 | ureide permease 3 | chr2:1097042-1098826
FORWARD LENGTH=1269
Length=1269
Score = 972 bits (526), Expect = 0.0
Identities = 687/757 (91%), Gaps = 41/757 (5%)
Strand=Plus/Plus
Query 258 GCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAGTCACTGAAG 317
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 331 GCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTGTCACTGAAG 390
Query 318 TCATCACAGCTAGTATCGCGGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 377
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TCATCACAGCTAGTATCGCCGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATA 450
Query 378 GAATTAATAGAGCTGAGGTCCTTTTTCCGGGGGTCGCTTGTTTCTTGATCGCTGTTT-TC 436
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 451 GAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGT- 509
Query 437 TTCGGTTCAGCTGTTCATAAATCAAATGCAGCTGATAACAAATCTAAACTCCAAG-ATTT 495
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 510 TTCGGTTCTGCTGTTCATAAATCAAATGCAGCTGATAACAAATCCAAACTCCAAGGATT- 568
Query 496 CAAAAGTTTAGAGACTGCTTCTTCCTTCAAAATGGAGACAAGTCCTACAAACGAAGGAAA 555
|||||||||||||||| ||||||||||| ||||||| |||||| ||| ||| ||||||||
Sbjct 569 CAAAAGTTTAGAGACTACTTCTTCCTTCCAAATGGAAACAAGTTCTATAAAAGAAGGAAA 628
Query 556 AGCAAAAGTAGGGACTGCAGATTTTCTTATTGAGCTTGAGAAACAAAGAGCCATAAAGGT 615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 629 AGCAAAAGTAGGGACTGCAGATTTTCTTATTGAGGTTGAGAAACAAAGAGCCATAAAGC- 687
Query 616 TTTTGGGAAAAGCACGATAATTGGACTGGCGATAACATTCTTTGCCGGTATCTGTATCTC 675
| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 688 -------A----CA--ATAATTGGACTGGCGATAACATTCTTTGCCGGTATCTGTTTCTC 734
Query 676 TCTAATCTCACCTGCAGTCAGCTTAGCGACAAACGATCAATGGCACACTTTGAAACATGG 735
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TCTAATCTCACCTGCAGTAAGCTTAGCGACAAACGATCAATGGCACACTTTGAAACATGG 794
Query 736 AGTT--C-CA-----AAAC-TG-A-----A----T----GTGTACACTGCCTTCTTCTAC 772
|||| | || |||| || | | | |||||||| ||||||||||||
Sbjct 795 AGTTGGCACACTTTGAAACATGGAGTTCCAAAACTCAATGTGTACACAGCCTTCTTCTAC 854
Query 773 TTCTCAATCTCTTCATTTGGAGTTGGTATGATACTAAACATCATATTTCTCTATTGGCCT 832
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 855 TTCTCCATCTCTTCATTTGGGGTTGGTCTGATACTAAACATCATATTTCTCTATTGGCCT 914
Query 833 ATACTTGGTCTGCCAAGATCATCTTTCATGGCTTACCTAAATGACTGGAACGGTCGAGGC 892
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 915 ATACTTGGTCTCCCAAGATCATCTTTCAAGGCTTACCTAAATGACTGGAACGGTCGAGGC 974
Query 893 TGGTCTTTCTTAGCTGGATTTCTCTGTGGATTTGGCAATGGTCTTCAGTTCATGGGCGGT 952
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 975 TGGTCTTTCTTGGCTGGATTTCTCTGTGGATTTGGTAATGGTCTTCAGTTTATGGGCGGT 1034
Query 953 CAAGCCGCTGGTTATGCAGCTGCAGGCGCTGTTCAGG 989
||||||||||||||||| |||||||| ||||||||||
Sbjct 1035 CAAGCCGCTGGTTATGCTGCTGCAGGAGCTGTTCAGG 1071
Score = 401 bits (217), Expect = 6e-111
Identities = 241/253 (95%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 6 TTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAGCAATCACTTGTATTC 65
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 37 TTTGGTGATTTTATAAAATGTATGTGATAGAGAGCAAAGGAGGAACAATCACTTGTATGC 96
Query 66 TCTTCGCTCTGCTCTTCTTGGGGACATGCCCAGCAATCATGACTCTAACCGAAAGACGCG 125
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 97 TCTTGGCTCTGCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCG 156
Query 126 GTCGACTTCCTCAACACACTTATCTTGACTACACACTCACAAACCTGTTAGCTGCTGTAA 185
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 157 GTAGACTTCCTCAACATACTTATCTTGACTACACACTGACAAACCTGTTAGCTGCAGTTA 216
Query 186 TCATAGCGTTTACACTAGGCGAGATAAGTCCAAGCAGACCAAATTTCATCACACAGCTTT 245
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 217 TCATAGCGTTTACACTAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTT 276
Query 246 CTCAAGATAATTG 258
|||||||||||||
Sbjct 277 CTCAAGATAATTG 289
Score = 196 bits (106), Expect = 3e-49
Identities = 114/118 (97%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1007 ACATTTTGGGGGATACTGCTATTTGGAGAATACAAAAGATCATCAAGAAAAACATATATA 1066
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1116 ACATTTTGGGGGATACTGCTGTTTGGAGAATACAAAAGATCATCAAGAAAAACATATACA 1175
Query 1067 CTTCTTATCAGTATGCTTTTTATGTTCATAGTTGCAGTCGCGGTTCTGATGGCCTCAT 1124
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1176 CTTCTTATCAGTATGCTATTTATGTTCATAGCTGCAGTCGCGGTTCTGATGGCCTCAT 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5