BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936157
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03620.1 | Symbols: MGT3, MRS2-5 | magnesium transporter 3 |... 2183 0.0
> AT2G03620.1 | Symbols: MGT3, MRS2-5 | magnesium transporter 3
| chr2:1100339-1102768 REVERSE LENGTH=1595
Length=1595
Score = 2183 bits (1182), Expect = 0.0
Identities = 1264/1305 (97%), Gaps = 0/1305 (0%)
Strand=Plus/Plus
Query 2 AAGAGAGGACAGAGCAAACATGGGAGAGCAACTGGATCCATTTTCGGCTTCTAATCTTCC 61
||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 161 AAGAGAGGATTGAGCAAACATGGGAGAACAACTAGATCCATTTTCCGCTTCTAATCTTCC 220
Query 62 GGATTTTATATCTTCGCAAAAAATTGGTAGACCGGTTAATTTCGAAGGACAAAATAACCG 121
|||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 221 GGATTTCATATCTTCTCAAAAAATTGGTAGACCGGTTAATTTCGAAGGACAAACTAACCG 280
Query 122 TGGGCATCCGTTTTCTGGTCTTAAGAAGAGAGGTCAATCTAGTCGTTCTTGGGTGAAAAT 181
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TGGGCATCCTTTTTCTGGTCTTAAGAAGAGAGGTCAATCTAGTCGTTCTTGGGTGAAAAT 340
Query 182 TGATCAAGATGGGAACTCGGCCGTTTTGGAGCTCGATAAGGCGACTATAATGAAGCGTTG 241
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 341 TGATCAAGATGGGAACTCTGCGGTTTTGGAGCTCGACAAGGCGACTATAATGAAGCGTTG 400
Query 242 TTCTTTACCATCCAGGGATTTGAGACTACTTGATCCTTTGTTTATCTATCCCTCGAGTAT 301
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 401 TTCCTTACCATCCAGGGATTTGAGACTCCTTGACCCTTTGTTTATCTATCCCTCGAGTAT 460
Query 302 TTTGGGGCGTGAGAGAGCGATAGTTGTCAGTCTTGAGAAGATCAGGTGTATAATCACAGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 461 TTTGGGGCGTGAGAGAGCGATAGTTGTCAGTCTTGAGAAGATCAGGTGTATTATCACAGC 520
Query 362 CGAAGAGGTTATTCTCATGAATGCTCGAGATGCATCTGTTGTTCAGTACCAGTCGGAACT 421
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGAAGAGGTCATTCTCATGAATGCTCGAGATGCATCTGTTGTTCAGTACCAGTCGGAACT 580
Query 422 GTGTAAACGCCTTCAATCAAACCAAAACCTAAATATCAAAGATGATTTGCCGTTTGAATT 481
|||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||
Sbjct 581 GTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGATGATTTGCCATTTGAATT 640
Query 482 TAAAGCGTTGGAGCTGGCTTTGGAATTATCTTGCTTGTCTTTAGATGCACAGGTGAATGA 541
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 641 TAAAGCGTTGGAGCTGGTTTTGGAACTATCTTGCTTGTCTTTAGATGCACAGGTGAATGA 700
Query 542 GCTTGAGATGGAGGTGTATCCTGTTCTGGATGAACTAGCCACAAACATCAGCACCCTTAA 601
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 701 GCTTGAGATGGAGGTGTATCCCGTTCTTGATGAACTAGCCACAAACATCAGCACCCTTAA 760
Query 602 TCTAGAACACGTGCGCAGGCTAAAAGGCCGTCTTCTTACCTTAACACAGAAAGTTCAGAA 661
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 761 TCTAGAACACGTGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAA 820
Query 662 GGTTTGTGATGAAATAGAACATTTAATGGATGATGATGATGACATGGCTGAGATGTATTT 721
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGATGTATTT 880
Query 722 GACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGGAGCTAGAAGATAACATTGG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGGAGCTAGAAGATAACATTGG 940
Query 782 TGAGGACTTTGAATCTTCTGGTATAGTTTCGAAATCTGCACCGGTTTCACCTGTGGGCTC 841
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 941 TGAGGACTTTGAATCTTCTGGAATAGTTTCGAAGTCTGCGCCGGTTTCACCTGTGGGCTC 1000
Query 842 AACAAGTGGAAACTTTGGGAAGCTTCAAAGAGCCTTTAGCAGCATTGTTGGCTCACATAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AACAAGTGGAAACTTTGGGAAGCTTCAAAGAGCCTTTAGCAGCATTGTTGGCTCACATAA 1060
Query 902 AAGCTTGTTAAGCTCCTCTAGCATCGGAGAGAACATTGATCAACTAGAGATGTTACTAGA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AAGCTTGTTAAGCTCCTCTAGCATCGGAGAGAACATTGATCAACTAGAGATGTTACTAGA 1120
Query 962 AGCTTACTTCGTCGTTGTTGATAACACACTGAGCAAATTATCATCGCTGAAAGAGTATAT 1021
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1121 AGCTTACTTTGTCGTTGTTGATAACACTCTGAGCAAATTATCATCGCTGAAAGAGTATAT 1180
Query 1022 AGATGATACAGAGGATCTGATCAACATTAAGCTGGGGAATGTGCAGAATCAGTTGATTCA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGATGATACAGAGGATCTGATCAACATTAAGCTGGGGAATGTGCAGAATCAGTTGATTCA 1240
Query 1082 GTTCCAACTGCTTCTCACCGCGGCAACCTTTGTGGCAGCCATTTTTGCCGCTGTAACCGC 1141
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1241 GTTTCAACTGCTTCTCACCGCGGCAACCTTTGTGGCAGCTATTTTTGCCGCTGTAACCGC 1300
Query 1142 AGTCTTTGGGATGAATTTGCAAGACTCTGTTTTCCAGAATCCGACGACGTTCCAGTATGT 1201
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1301 TGTCTTCGGGATGAATTTGCAAGACTCTGTTTTCCAGAATCCGACGACTTTCCAGTATGT 1360
Query 1202 TTTGCTGATAACAGGTATTGGATGCGGATTTTTGTATTTTGGTTTTGTGTTATACTTCAA 1261
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1361 TTTACTGATAACAGGTATTGGATGCGGTTTTTTGTATTTTGGTTTTGTGTTATACTTCAA 1420
Query 1262 GCACAAAAAAGTATTCCCTCTCTGAAAACTTATGTTAGAGAAGAA 1306
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GCACAAGAAAGTATTCCCTCTCTGAAAACTTATGTTAGAGAAGAA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5