BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936173
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03770.1 | Symbols: | P-loop containing nucleoside triphosp... 1402 0.0
> AT2G03770.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:1150871-1151845
REVERSE LENGTH=975
Length=975
Score = 1402 bits (759), Expect = 0.0
Identities = 907/979 (93%), Gaps = 8/979 (1%)
Strand=Plus/Plus
Query 21 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTGAATTTTG-CCAAGA 79
|||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||
Sbjct 1 ATGACAAAATCCGAAACCACTCTTTCGAAGTTATTGGTAGAATCTG-AGTTAGTCCAAGA 59
Query 80 ATGTAAGGAGTTGCTGTCTTCTCTTCCTAGAGACAGAAGC-TTTTATGCAGAGTATCTCT 138
||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 60 ATGCGAGGAGTTGCTGTCTTCTCTTCCGAGAGACAGAAGCGTTTT-TGCAGAGTATCTCT 118
Query 139 ATCAATACCAAGGATTTTGGTACCCACCAAATCTCTTAGAAGGTGTTCTATACAGCCAGA 198
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 119 ATCAATACCAGGGATTTTGGTATCCACCAAATCTTTTAGAAGGTGTTCTATATAGCCAGA 178
Query 199 AGCATTTTCAGGCAAGAGATTCAGACATCATCCTTGTAAGCAGTCCTAAATCAGGTACAA 258
||||||||||||| ||||||||||||||| |||||| ||||| |||||| ||||||||||
Sbjct 179 AGCATTTTCAGGCCAGAGATTCAGACATCGTCCTTGCAAGCATTCCTAAGTCAGGTACAA 238
Query 259 CTTGGTTGAAATCACTCGTCTTTGCTCTGATTCATAGACAGGAATTCCAAACCCCTCTAG 318
|||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||
Sbjct 239 CTTGGTTGAAATCACTTGTCTTTGCTTTGATTCATAGGCAAGAATTCCAAACCCCTCTAG 298
Query 319 AATCCCATCCTCTGCTCGATAACAACCCGCATACTCTCGTGACCTTTATCGAAGGTTTCC 378
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 TATCCCATCCTCTGCTCGATAACAACCCGCATACCCTCGTGACCTTTATCGAAGGTTTCC 358
Query 379 AGTTTCACACTCAAGATACTTCTCCTAGTATCTACTCTACACACATTCCTCTAGGGTCAC 438
| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 359 ACCTTCACACTCAAGATACTTCTCCTAGGATCTTCTCTACACACATTCCTGTAGGGTCAC 418
Query 439 TCCCAGAGTCTGTTAAGGACTCGTCCTGTAAAGTGGTGTATTGCTGCAGGAACCCAAAGG 498
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 419 TCCCTGAGTCAGTTAAGGACTCGTCCTGTAAAGTTGTGTATTGCTGCAGGAACCCGAAGG 478
Query 499 ACGCGTTTGTCTCACTTTGGCATTTCGTGAAACGTTTGACTCTCAAGGAGATGGTTGGAT 558
|||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||||
Sbjct 479 ACGCGTTTGTCTCACTTTGGCATTTCATGAAAAATTTGATTGTTAAGGAGATGGTTGGAT 538
Query 559 GCACAATGGAGGAAATGGTGA-GTGGGTTTTGCAAAGGGTCTAGCGTTTATGGACCGTTT 617
||||||||||||||||||||| || |||||| ||||||||| | || ||||| |||
Sbjct 539 GCACAATGGAGGAAATGGTGAGGT-TTTTTTGCCGAGGGTCTAGTATATACGGACCCTTT 597
Query 618 TGGGATCATGCATTAGAGTACTGGAAAGAAAGCCGAGAAAATCCGAAAAAGGTTATGTTT 677
|||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 598 TGGGATCATGTATTACAGTATTGGAAAGAAAGCCGAGAAAACCCGAAAAAGGTTATGTTT 657
Query 678 GTTATGTATGAAGAGATGAGAGAGCAGCCTCAGAATTCGTTGATGCGGATCGCCGAGTTC 737
|| |||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 658 GTAATGTATGAAGAGATGAGAGAGCAGCCTCAGGAGTGGGTGATGCGGATCGCCGAGTTC 717
Query 738 TTGGGATGTTCTTTTACAGAGGAAGAGATAGAGAATGGAGT-TCTAGAAGATATCGTGAA 796
||||||| |||||||||||| |||||||||||||||||||| | | ||||||||| | ||
Sbjct 718 TTGGGATATTCTTTTACAGAAGAAGAGATAGAGAATGGAGTAT-TGGAAGATATCATAAA 776
Query 797 GCTGTGTAGTCTTGAGAATCTGAGTAAACTGGAGGTTAATGAGAAGGGTAAGTTAGTGAA 856
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 777 GCTGTGTAGTCTTGAGAATCTGAGTAAATTGGAGGTTAATGAGAAGGGTAAGTTACTGAA 836
Query 857 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGAATGGAGACTAAGGCATTTTTTAGGAAAGGAGAGATTGGTGGATGGAGAGATACTTT 896
Query 917 AACTCCTTCATTAGCAGAGGAAATTGATAAAACCACTGAGCAGAAACTAATTGGTTCTGA 976
|||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 897 AACTCCTTTGTTAGCAGAGGAAATTGATAAAACCACTAAGGAGAAACTAATTGGTTCTGA 956
Query 977 TTTTAGATTCTTTTGCTAA 995
|||||||||||||||||||
Sbjct 957 TTTTAGATTCTTTTGCTAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5