BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936189
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor | ch... 667 0.0
AT2G03900.1 | Symbols: | pseudogene, similar to iron-regulated... 507 1e-142
> AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor |
chr2:1289832-1291383 FORWARD LENGTH=1342
Length=1342
Score = 667 bits (361), Expect = 0.0
Identities = 499/561 (89%), Gaps = 27/561 (5%)
Strand=Plus/Plus
Query 3 TTCTTTTCACTTTCTTCAATGGCTTCTTCTAAAGCTTGTTATAAACTC-CTTACCATTAC 61
||||||||||||||| ||||||||| ||||||||| |||||||||||| | ||||||||
Sbjct 95 TTCTTTTCACTTTCTCCAATGGCTTATTCTAAAGCATGTTATAAACTCAC-CACCATTAC 153
Query 62 AATTCTCCTTCTCTCCTTCACAATTA-CCTCTCTTGCCGGTAACGCCGAGTACGCAGACG 120
|||||| ||||| |||||||| |||| ||||||||||||||||||| || ||||||| |
Sbjct 154 AATTCTTCTTCTATCCTTCAC-ATTACCCTCTCTTGCCGGTAACGCTGAAAACGCAGATG 212
Query 121 TAAGCGAATGCAGAGCGGAATCTGGAGATCCATCATGTCACAACAACAAA-ATAGCACAA 179
|||| ||||||| ||| ||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 213 TAAGTGAATGCAAAGCTGAATCTGGAGATCTATCATGTCACAACAACAAAGA-AGCACAA 271
Query 180 AAGTTTAAACTCATTGCAATCCCATCGATCTTAGTGGCGAACATGATCGGTGTTTCTTTA 239
||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 272 AAGCTTAAAATCATTGCAATCCCATCTATCTTAGTGGCGAGCATGATCGGTGTTTCTTTA 331
Query 240 CCGTTGCTTTCTCGTTTCATTCCTGTTTTAGGACCCGACCGAGATATGTTTGTGATCGTT 299
|||||| ||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct 332 CCGTTGTTTTCTCGTTCCATTCCTGCTTTAGGACCCGATCGAGAAATGTCTGTGATCGTT 391
Query 300 AAGACTTTAGCTTCGGGTGTAATTTTGGCAACCGGTTTTATGCATGTGTTACCGGACTCT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 392 AAGACTTTAGCTTCGGGTGTAATTCTGGCAACCGGTTTTATGCATGTGTTACCGGACTCT 451
Query 360 TACGATGATCTCACGTCCAAATGTTTGCCTGAAGAGCCC-TGG-AGGAAGTTTCCTTTCA 417
| |||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||
Sbjct 452 TTCGATGATCTCACATCCAAATGTTTGCCTGAAGA-CCCGTGGCAG-AAGTTTCCTTTC- 508
Query 418 GC-ACTTTCATCGCGACGGTCTCGGCTTTGCTCGCTTTAATGATTGATTCGT-----ATG 471
|| ||||||||| ||| | ||||||||||||||| |||||||||||| |||| |||
Sbjct 509 GCCACTTTCATCACGATGATCTCGGCTTTGCTCGTTTTAATGATTGAATCGTTTGCGATG 568
Query 472 ----CG-A--CGAG-A-A-CTAGTAAGCGTGAAGGAGAAGCCGTACCATTAGAAAATGGA 521
|| | |||| | | ||||||||||||||||||||| |||||| ||||||||||||
Sbjct 569 TGTGCGTATGCGAGGAGAACTAGTAAGCGTGAAGGAGAAGTCGTACCGTTAGAAAATGGA 628
Query 522 TCTAATCCTGTGGATACACAA 542
|||||| ||||||||||||||
Sbjct 629 TCTAATTCTGTGGATACACAA 649
Score = 628 bits (340), Expect = 2e-179
Identities = 495/568 (87%), Gaps = 18/568 (3%)
Strand=Plus/Plus
Query 511 TAGAAAATGGATCTAATCCTGTGGATACACAAGAAAAGGTCAACGATGATAAGACAAGTC 570
||||||||||||||| | |||||| | |||||||||||||||||| ||||||||||||
Sbjct 666 TAGAAAATGGATCTAGTTATGTGGAGAAACAAGAAAAGGTCAACGAAGATAAGACAAGTG 725
Query 571 AACTTCTTAGGAATAGAGTCATTGCTTTGGTGTCGGAACTAGGTATCGTAGTTCACTC-G 629
||||||||||||||| |||||||||| | | | |||||||||||||||||||||||| |
Sbjct 726 AACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTAGTTCACTCGG 785
Query 630 TTCGTGACCGGTCTCGCTATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATC 689
|| |||| |||||| |||||||||||||| |||||| |||||||| ||| |||||| |||
Sbjct 786 TT-GTGATCGGTCTTGCTATGGGGGCTTCTGATAACAAATGTACCGTACAATCACTCATC 844
Query 690 GCAGCGCTTTGTTTCCATCAACT-TGTTGAAGGAATGAGACTCGGTGGTTCCATTTTACA 748
||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||
Sbjct 845 GCAGCGCTTTGTTTCCATCAACTCT-TTGAAGGAATGGGACTCGGTGGTTCCATCTTACA 903
Query 749 GGCGGAATTGAAAAGCAAAATGAATTGGATAATGGTGTTTTCCTTTCCGGTCACAACACA 808
||| |||| |||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct 904 AGCGCAATTTAAAAGCAAAACAAATTGGACAATGGTGTTTTTCTTTTCGGTCACAACACC 963
Query 809 AGTTGGGATAGCTTTAGGGATGGAAATACACAAGATATATGATGAGACAAGTCCGACAT- 867
| ||||||| | ||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 964 ATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGTCCAAC-TG 1022
Query 868 CGTTGATCGTAGTGGGGGTCTTGAATGCGTGTTCTGCAGGATTATTGATTTATATGGCAC 927
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1023 CGTTGATCGTTGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTGTTGATTTATATGGCCC 1082
Query 928 TTGTTAATCTCTTGGCTCATGAATTCTTCGGAC----GAC-CAAAG-AAGATTCA--TT- 978
||||||||||||||||||||||||||||||||| || ||| | || ||| | ||
Sbjct 1083 TTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAATATTAAACTTC 1142
Query 979 -T--CCTAGGTTATGTTGCTGTCTTTATAGGTGGTGGAGGAATGTCTTTAATGGCTAAGT 1035
| ||| |||||||||||| ||| | ||||| | |||||||||||| ||||||||||
Sbjct 1143 ATGTCCTCGGTTATGTTGCTACCTTCACAGGTGCCGCAGGAATGTCTTTGATGGCTAAGT 1202
Query 1036 GGGCATAGAACTCTTGAGTTAGACTCAT 1063
||||||||||||||||||||||||||||
Sbjct 1203 GGGCATAGAACTCTTGAGTTAGACTCAT 1230
> AT2G03900.1 | Symbols: | pseudogene, similar to iron-regulated
transporter 2, blastp match of 57% identity and 4.0e-59 P-value
to GP|9716482|gb|AAF97510.1|AF246266_2|AF246266 iron-regulated
transporter 2 {Lycopersicon esculentum} | chr2:1191786-1192996
REVERSE LENGTH=1211
Length=1211
Score = 507 bits (274), Expect = 1e-142
Identities = 393/448 (88%), Gaps = 18/448 (4%)
Strand=Plus/Plus
Query 21 ATGGCTTCTTCTAAAGCTTGTTATAAACTC--C-TTACCATTACAATTCTCCTTCTCTCC 77
||||||| |||||||||||||||||||||| | ||||||||||| |||||||| | |
Sbjct 1 ATGGCTTATTCTAAAGCTTGTTATAAACTCATCACCACCATTACAATCCTCCTTCTATAC 60
Query 78 TTCACAATTACCTCTCTTGCCGGTAACGCCGAGTACGCAGACGTAAGCGAATGCAGAGCG 137
|||||| || ||||||||||| || | ||| ||| ||||| |||||||||||
Sbjct 61 TTCACATTTGCCTCTCTTGCC---AA-----A-AACGTAGATGTAAGTGAATGCAGAGCT 111
Query 138 GAATCTGGAGATCCATCATGTCACAACAACAAA-ATAGC-ACAAAAGTTTAAACTCATTG 195
||||||||||||||||||||||||||||||||| | ||| | ||||| ||||| | ||||
Sbjct 112 GAATCTGGAGATCCATCATGTCACAACAACAAAGA-AGCTA-AAAAGCTTAAAATGATTG 169
Query 196 CAATCCCATCGATCTTAGTGGCGAACATGATCGGTGTTTCTTTACCGTTGCTTTCTCGTT 255
|||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 170 CAATCCCATCTATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACAGTTCCTTTCTCGTT 229
Query 256 TCATTCCTGTTTTAGGACCCGACCGAGATATGTTTGTGATCGTTAAGACTTTAGCTTCGG 315
|||||||| ||||||||||||||||| ||| |||| |||| | ||||||||| ||||||
Sbjct 230 ACATTCCTGCTTTAGGACCCGACCGAGTTATATTTGGGATCATAAAGACTTTAACTTCGG 289
Query 316 GTGTAATTTTGGCAACCGGTTTTATGCATGTGTTACCGGACTCTTACGATGATCTCACGT 375
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 290 GTGTAATTTTGGCAACCGCTTTTATGCATGTGTTACCGGACTCTTTCGATGATCTCACAT 349
Query 376 CCAAATGTTTGCCTGAAGAGCCC-TGGAGGAAGTTTCCTTTCAGCACTTTCATCGCGACG 434
||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
Sbjct 350 CCAAATGTTTGCCTGAAGA-CCCGTGGAGGAAGTTTCCTTTCACCACTTTCATCGCGATG 408
Query 435 GTCTCGGCTTTGCTCGCTTTAATGATTG 462
||||||||| |||| |||||||||||
Sbjct 409 AACTCGGCTTTTCTCGTTTTAATGATTG 436
Score = 252 bits (136), Expect = 6e-66
Identities = 259/314 (82%), Gaps = 26/314 (8%)
Strand=Plus/Plus
Query 744 TTACAGGCGGAATTGAAAAGCAAAATGAATTGGATAATGGTGTTTTCCTTTCCGGTCACA 803
||| |||||||||| ||||||||||||||||||| ||||||| || ||||||
Sbjct 910 TTATAGGCGGAATTTAAAAGCAAAATGAATTGGAAAATGGTG-------TT---GTCACA 959
Query 804 ACACAAGTTGGGATAGCTTTAGGGATGGAAATACACAAGATATATGATGAGACAAGTCCG 863
| ||| ||||||| |||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct 960 ATGCAATTTGGGATTGCTTTAGGGATGCAAATACAAAAGATATATGGTGAGACAAGTCCG 1019
Query 864 ACATCGTTGATCGTAG-TGGGGGTCTTGAATGCGTGTTCTGCAGGATTATTGATTTATAT 922
||| |||||||| | | ||||| | |||||||||||||||||||||||||||||| || |
Sbjct 1020 ACAGCGTTGATC-TTGATGGGGATGTTGAATGCGTGTTCTGCAGGATTATTGATTGATCT 1078
Query 923 GGCACTTGTTAATCTCTTGGCTCATGAATTCTTCGGAC----GAC-CAAAG-AA---GA- 972
||| |||||||||||||||||||||||||| | ||||| || ||| | || ||
Sbjct 1079 GGCCCTTGTTAATCTCTTGGCTCATGAATTATACGGACCAAAGATACAAGGGAATATGAA 1138
Query 973 --TTCATTTCCTAGGTTATGTTGCTGTCTTTATAGGTGGTG-GAGGAATGTCTTTAATGG 1029
||||| |||| |||||||||||| ||| ||||||| | | ||||||||||| ||||
Sbjct 1139 ACTTCATGTCCTCGGTTATGTTGCTACCTTCATAGGTGCCGCG-GGAATGTCTTTGATGG 1197
Query 1030 CTAAGTGGGCATAG 1043
||||||||||||||
Sbjct 1198 CTAAGTGGGCATAG 1211
Score = 159 bits (86), Expect = 4e-38
Identities = 96/101 (95%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 648 ATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATCGCAGCGCTTTGTTTCCAT 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 745 ATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATCGCAGCGTTTTGTTTCCAT 804
Query 708 CAACTTGTTGAAGGAATGAGACTCGGTGGTTCCATTTTACA 748
|||| | |||||||||||||||||||||| ||||||||||
Sbjct 805 GAACTCGCTGAAGGAATGAGACTCGGTGGTCCCATTTTACA 845
Score = 119 bits (64), Expect = 6e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 539 ACAAGAAAAGGTCAACGATGATAAGACAAGTCAACTTCTTAGGAATAGAGTCATTGCTTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACAAGAAAAGGTCAACGATGATAAGACAAGTCAACTTCTTAGGAATAGAGTCATTGCTTT 509
Query 599 GGTG 602
||||
Sbjct 510 GGTG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5