BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936191

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03935.1 | Symbols:  | pseudogene similar to putative carbox...   327    7e-89
  AT2G03930.2 | Symbols:  | Protein of Unknown Function (DUF239) ...  58.4    1e-07


> AT2G03935.1 | Symbols:  | pseudogene similar to putative carboxyl-terminal 
proteinase | chr2:1227749-1228433 REVERSE LENGTH=585
Length=585

 Score =  327 bits (177),  Expect = 7e-89
 Identities = 313/377 (83%), Gaps = 16/377 (4%)
 Strand=Plus/Plus

Query  353  ATTTTTGCAAATTTAGCTTATGCAGATGATGTGCAATGGGGTGGTGAGATCGTGAACTCA  412
            |||||  ||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct  220  ATTTTCACAAATTTAGCTTATGGAGACGAGGTGCAATGGGGTGGTGAGATCGTGAACTCA  279

Query  413  -AACATTTCCGGTCGACACACTACAACACAGATGGGATCCGGTCATTTTCCTGATGAAGG  471
             || | |||||| ||||| || ||||| |||||||| |||||||| || ||  ||||| |
Sbjct  280  CAA-AGTTCCGGCCGACATACGACAACCCAGATGGGCTCCGGTCACTTCCCCAATGAAAG  338

Query  472  CTTCGACAGAGTTGGCTACGTT-CGAAACCTAGAGATCGTAGACAACAACAACGAATTCC  530
            ||||| || |||| ||||| || || ||| | ||||||||||| |||||||   | ||||
Sbjct  339  CTTCGGCAAAGTTAGCTAC-TTGCGCAACTTGGAGATCGTAGATAACAACAT--A-TTCC  394

Query  531  AGCCGGTTCAAGACATAAAAGTAATAG-CAACCGACCCTAAATTCTAC-ACTATCAAAAA  588
            |||| | ||||||| ||||| ||| || ||||| |||||||||| ||| | ||||||| |
Sbjct  395  AGCCCGCTCAAGACGTAAAATTAA-AGGCAACCAACCCTAAATTATACGA-TATCAAAGA  452

Query  589  CATGACTGGAGATGATTGGGGTACATATC-TCTTCTATGGAGGGTCAGGGTATAGTCAGA  647
            ||||  | | |||||| ||||||| || | | |||| ||||||| | ||||||||| |  
Sbjct  453  CATGGTTAGTGATGATGGGGGTACTTA-CATTTTCTTTGGAGGGCCCGGGTATAGT-A--  508

Query  648  TTCATTCAGGAGTCTCTTCTCTAGCATTGAGTTCgtttttctattattttagtttcatca  707
            | ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||
Sbjct  509  TGCATTCAGGAGTCTCTTCTCAAGCATTGAGTTCGTTTTTTTTTTATTGTAGTTTCATCA  568

Query  708  tttcttttatcatttag  724
            ||| |||| ||||||||
Sbjct  569  TTTGTTTTGTCATTTAG  585


> AT2G03930.2 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr2:1204920-1206249 REVERSE LENGTH=495
Length=495

 Score = 58.4 bits (31),  Expect = 1e-07
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  313  CAGTAAACCAAGACTATTCATCTTTTGGACT  343
            |||||||||||||||||||||||||||||||
Sbjct  324  CAGTAAACCAAGACTATTCATCTTTTGGACT  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36218819987


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5