BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936193
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03960.1 | Symbols: | pseudogene, similar to putative carbo... 298 8e-80
AT3G43832.1 | Symbols: | pseudogene, similar to putative carbo... 279 3e-74
> AT2G03960.1 | Symbols: | pseudogene, similar to putative carboxyl-terminal
proteinase, blastp match of 43% identity and
4.7e-54 P-value to GP|21389708|gb|AAK84952.2||AY039662 putative
carboxyl-terminal proteinase {Gossypium hirsutum} | chr2:1246148-1249170
REVERSE LENGTH=3023
Length=3023
Score = 298 bits (161), Expect = 8e-80
Identities = 309/380 (81%), Gaps = 12/380 (3%)
Strand=Plus/Plus
Query 726 AGGATCAAAAGAGCGGAAACTGGTGGCTGAGTTTAGGATCCAACCATTCATTGGTTGGAT 785
|||||||| || || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2650 AGGATCAAGAGTCCGAAAACTGGTGGCTGAGTTTGGGATCCAACCATTCATTGGTTGGAT 2709
Query 786 ATTGGCCAGCCGA-AATTTTTGCAAATTTAGCTTATGCAGATGAGGTCCAATGGGGTGGT 844
||||||||| | |||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 2710 ATTGGCCAGGT-ACAATTTTCCCAAATTTAGCTTATGCAGACGACGTGCAATGGGGTGGT 2768
Query 845 GAAATCGTTAACTCGCAAAGT-TTGGGCCGTCACACGACAACACATATGGGTTCTGGTCA 903
|| |||| || || |||||| |||| ||| ||||| |||||||| ||||| |||||||
Sbjct 2769 GAGGTCGTGAATTCACAAAGTCTTGG-CCGACACACAACAACACAAATGGGATCTGGTCG 2827
Query 904 CTTCTCCGATGAAGGCTTCGGCAAAGTTGGCTACTTCCGCAACTTGGAGATCATAGATAA 963
||||||||| | ||||||| | |||||| ||||||| | ||| |||||||| | |||||
Sbjct 2828 CTTCTCCGACGGAGGCTTCAGAAAAGTTAGCTACTTTCACAATTTGGAGATTGTCGATAA 2887
Query 964 TAACAGATTCCAG-CCGGTTCAAGACATAACAGTAAAAGCA-ACCGATCGC-AAGTTCTA 1020
||||||||| || ||| ||| || || |||| || | || || | | ||||||||
Sbjct 2888 CAACAGATTCAAGTCCG-TTCGTGATGTAGGAGTACTAGTAGAC-GACC-CTAAGTTCTA 2944
Query 1021 CGATATCAAAGAC-ATGTTTAGAGAAGATTGGGGTACTTATTTTTTCTATGGGGGGCCTG 1079
| | |||| || | ||||||||||| |||||||||| ||| |||| ||||| ||||| |
Sbjct 2945 CAACATCAGAG-CGATGTTTAGAGATGATTGGGGTAGTTACATTTTGTATGGAGGGCCAG 3003
Query 1080 GCCGGATCCATTCAGGAGTC 1099
|| || ||||||||||||
Sbjct 3004 ACCATATGCATTCAGGAGTC 3023
> AT3G43832.1 | Symbols: | pseudogene, similar to putative carboxyl-terminal
proteinase, blastp match of 45% identity and
6.4e-30 P-value to GP|21389708|gb|AAK84952.2||AY039662 putative
carboxyl-terminal proteinase {Gossypium hirsutum} | chr3:15682293-15682874
REVERSE LENGTH=582
Length=582
Score = 279 bits (151), Expect = 3e-74
Identities = 290/356 (81%), Gaps = 13/356 (4%)
Strand=Plus/Plus
Query 726 AGGATCAAAAGAG-C-GGAAACTGGTGGCTGAGTTTAGGATCCAACCATTCATTGGTTGG 783
|||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 213 AGGATC--AAGAGTCTGGGAACTGGTGGCTAAGTTTGGGATCCAACCATTCATTGGTTGG 270
Query 784 ATATTGGCCAGCCG-AAATTTTTGCAAATTTAGCTTATGCAGATGAGGTCCAATGGGGTG 842
||||||| | | | |||||| |||||||||||||| | | || || ||||||||||
Sbjct 271 ATATTGGTTAACTGCAAATTTC--CAAATTTAGCTTATATATACGACGTGCAATGGGGTG 328
Query 843 GTGAAATCGTTAACTCGCAAAGTTTGGGCCGTCACACGACAACACATATGGGTTCTGGTC 902
|||| | || || ||||||||||| ||| | ||||| | ||||| ||||| |||||||
Sbjct 329 GTGAGGTTGTGAATTCGCAAAGTTTTGGCTGACACACAATTACACAGATGGGATCTGGTC 388
Query 903 ACTTCTCCGATGAAGGCTTCGGCAAAGTTGGCTACTTCCGCAACTTGGAGATCATAGATA 962
||||||||||||||||||| | ||||||| ||||||| ||||||||||||||| || |||
Sbjct 389 ACTTCTCCGATGAAGGCTTTGACAAAGTTAGCTACTTTCGCAACTTGGAGATCGTATATA 448
Query 963 ATAACAGATTCCAGCCGGTTCAAGACATAACAGTAAAAGCA-ACCGATCGCAAGTTCTAC 1021
| |||| | || |||| ||||||||| || |||||||| | || |||| |||||||||
Sbjct 449 ACAACATAATCAAGCCCGTTCAAGACGTAGTAGTAAAAGTAGAC-GATCATAAGTTCTAC 507
Query 1022 GATATCAAAGACATGTTTAGAGAAG-ATTGGGGTACTTATTT-TTTCTATGGGGGG 1075
| | || || |||||||||| ||| ||||||||| ||| | ||| ||||| |||
Sbjct 508 AACACCAGAGTCATGTTTAGA-AAGGATTGGGGTAGTTACATATTT-TATGGAGGG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5