BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936205

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04034.1 | Symbols:  | Putative membrane lipoprotein | chr2:...   222    2e-57


> AT2G04034.1 | Symbols:  | Putative membrane lipoprotein | chr2:1297161-1297543 
FORWARD LENGTH=279
Length=279

 Score =  222 bits (120),  Expect = 2e-57
 Identities = 228/278 (82%), Gaps = 15/278 (5%)
 Strand=Plus/Plus

Query  30   ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACTTTCATG  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACATTCATG  60

Query  90   TTGCTTGAAACCAATGCATCAAGAAATGAG-CATAGTAGCAATCTTCCATTGTGCACATT  148
            |||||||||||||||||||||| |||| || | | ||||| |||||||||||||   |||
Sbjct  61   TTGCTTGAAACCAATGCATCAAAAAATAAGTC-TCGTAGCGATCTTCCATTGTGTGGATT  119

Query  149  CAAACTTA-ATTGT-AGTGGCATATGGTGTCCTGAAAAAATAG-AAAAGCATA-ACTGTA  204
             | |   | ||||| | |||| |||||||||||| | ||  || ||||  ||  | ||||
Sbjct  120  TAGAGA-ACATTGTGA-TGGCCTATGGTGTCCTGGAGAAGGAGGAAAAT-ATTCA-TGTA  175

Query  205  TCAGGTGGACTTGTGGCTTTAGTGAAGATTGTGACAAGTTTGTTCGTTGCGaaaaaaaTG  264
            |||  ||| |||||  ||||| |||||||||||| |||  | | || ||||||||||   
Sbjct  176  TCAATTGGTCTTGTAACTTTATTGAAGATTGTGAGAAGCGTATCCGCTGCGAAAAAA---  232

Query  265  CAGGACCT-GTTTGTTTTGAGGGAATATGCAATTGTAC  301
            |||||||| ||| |||| || ||| ||||| |||||||
Sbjct  233  CAGGACCTTGTT-GTTTCGATGGATTATGCGATTGTAC  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5