BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936207
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04034.1 | Symbols: | Putative membrane lipoprotein | chr2:... 268 2e-71
> AT2G04034.1 | Symbols: | Putative membrane lipoprotein | chr2:1297161-1297543
FORWARD LENGTH=279
Length=279
Score = 268 bits (145), Expect = 2e-71
Identities = 234/277 (84%), Gaps = 6/277 (2%)
Strand=Plus/Plus
Query 24 ATGGCGTCTAGAGCAACATCACTTTTCATCTTTTTCTTTCTCATCTCTTGCACTTTCATG 83
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGCGTCTAGAGCAACATCACTTTTCATCTTCTTCTTTCTCATCTCTTGCACATTCATG 60
Query 84 TTGCTTGAAACCAATGCATCAAGAAATAAGCCTAGTAGCAATATTCCACTGTGCGGATTT 143
|||||||||||||||||||||| ||||||| || ||||| || ||||| |||| ||||||
Sbjct 61 TTGCTTGAAACCAATGCATCAAAAAATAAGTCTCGTAGCGATCTTCCATTGTGTGGATTT 120
Query 144 AAACTTA-ATTGTGGTGGCATATGGTGTCCTGAAAAAATAGGAAAGCATA-ACTGTATCA 201
| | | |||||| |||| |||||||||||| | || |||||| || | |||||||
Sbjct 121 AGAGA-ACATTGTGATGGCCTATGGTGTCCTGGAGAAGGAGGAAAATATTCA-TGTATCA 178
Query 202 GGTGGGCTTGTGACTTTAGTGAAGATTGTGACAAGTTTGTTCGTTGCGAAAAAACAGGAC 261
||| ||||| |||||| |||||||||||| ||| | | || ||||||||||||||||
Sbjct 179 ATTGGTCTTGTAACTTTATTGAAGATTGTGAGAAGCGTATCCGCTGCGAAAAAACAGGAC 238
Query 262 CT-GTTTGTATGGAGGGAATATGCAATTGTACTAATT 297
|| ||| || | || ||| ||||| ||||||||||||
Sbjct 239 CTTGTT-GTTTCGATGGATTATGCGATTGTACTAATT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14828985955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5