BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936209

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) ...   420    7e-117


> AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) 
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620

 Score =  420 bits (227),  Expect = 7e-117
 Identities = 324/371 (87%), Gaps = 6/371 (2%)
 Strand=Plus/Plus

Query  134  AGACATATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGA  193
            ||||||||||||||||||| |||||| | |||||||||| ||||| |||| |||||||||
Sbjct  96   AGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGA  155

Query  194  GCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAA  253
            |||||||||||  || ||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct  156  GCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAA  215

Query  254  ATGCGAAGATGAGATTTTCAACAACATGTTGGATGAGACGATGCCAATGACAGATGAATG  313
            |||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| |||||||
Sbjct  216  ATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATG  275

Query  314  TTGTCGTGATGTATTGAATACTGGCAAAGATTGCCATCTCGCGA-TGGTTAAAATCATAT  372
            ||||| |||| ||||||| |||||||||||||| || || || | |||||||||||||||
Sbjct  276  TTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGC-ATTGGTTAAAATCATAT  334

Query  373  TCTCTACAAAAGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAAAAGGCAT  432
            |||| || || || |||||||| |||||||||||||||||||||||||||||| || |||
Sbjct  335  TCTCCACGAATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACAGACAT  394

Query  433  GGAACGATTGTATCCGTAGAGTCGGCA-GCAAAATTGGTGCTCCGATCTCTTTCGAGC-T  490
            |||| |||||| |||||||||| || | | | | ||||||||||| |||||||||| | |
Sbjct  395  GGAATGATTGTGTCCGTAGAGTTGGGATGGAGA-TTGGTGCTCCGGTCTCTTTCGAACCT  453

Query  491  GTAAACTAATA  501
             ||||| ||||
Sbjct  454  -TAAACCAATA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5