BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936212
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04031.1 | Symbols: | Protein of unknown function (DUF784) ... 462 1e-129
AT2G04041.1 | Symbols: | Protein of unknown function (DUF784) ... 381 3e-105
> AT2G04031.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620
Score = 462 bits (250), Expect = 1e-129
Identities = 411/485 (85%), Gaps = 26/485 (5%)
Strand=Plus/Plus
Query 21 ATGGCAAAGTC-TTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCG 79
||||||||||| ||||| |||||||||||| |||| ||| |||| |||| |||||||||
Sbjct 1 ATGGCAAAGTCTTTTTC-CATGGTAATGCTTGTATCTATAATAATATTTTACATGGCTCG 59
Query 80 TCCAATTTATTC-CCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACA 138
||||||||| || | || || | ||||| | || ||| | |||||
Sbjct 60 TCCAATTTACTCTCGGAATAA---A---ATATT-AGAA--GAT---------A-TAGACA 100
Query 139 TATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTG 198
|||||||||||||| |||||| | |||||||||| ||||| |||| ||||||||||||||
Sbjct 101 TATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGAGCTTG 160
Query 199 CTCACCATTTGCATAAAGAGTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCG 258
|||||| || ||| |||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 161 CTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGCG 220
Query 259 AAGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGATGAATGTTGTC 318
| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 221 ATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATGTTGTC 280
Query 319 GTGATGTTTTGAATACTGGCAAAGATTGCCACCTTGCAATGGTAAAAATCATATTCTCTA 378
|||| | ||||| |||||||||||||| ||||||||| |||| |||||||||||||| |
Sbjct 281 ATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATTCTCCA 340
Query 379 C-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACAGGCATGGAAC 437
| | |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 341 CGA-ATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACAGACATGGAAT 399
Query 438 GATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCGAGCCGTAAAC 496
|||||| ||||||||||||| | | |||||||||||||||||||||||| || |||||
Sbjct 400 GATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCTTAAAC 458
Query 497 TAATA 501
||||
Sbjct 459 CAATA 463
> AT2G04041.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1308089-1308544 REVERSE LENGTH=456
Length=456
Score = 381 bits (206), Expect = 3e-105
Identities = 384/467 (82%), Gaps = 24/467 (5%)
Strand=Plus/Plus
Query 21 ATGGCAAAGTCTTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCGT 80
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCGCATCCATGGTAATGTTTTACATGGCTTGT 60
Query 81 CCAATTTATTCCCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACATA 140
|||||||| ||||| |||| || |||| || ||| ||| | || || ||
Sbjct 61 CCAATTTACTCCCAGAAAA---AT--ATAT-CAGAAG--ATAT-A---GA--CA----TA 102
Query 141 TCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTGCT 200
|||||||| || |||||| ||||||| ||| ||||| || | ||||||||||||||||
Sbjct 103 GCTCCAACTTCAGTGGAAGGGGCTGATTTACCCACAACAGAGTATGAGATAGAGCTTGCT 162
Query 201 CACCATTTGCATAAAGAGTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCGAA 260
|||| ||| ||| |||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 163 CACCGTTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGTGAT 222
Query 261 GATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACA-GATGAATGTTGTCG 319
|||||||||||||| |||||| |||||| |||||| ||||||||| | ||||||||||||
Sbjct 223 GATGAGATTTTCAATAACATGATGGATGGGACGACACCAGTGACAAG-TGAATGTTGTCG 281
Query 320 TGATGTTTTGAATACTGGCAAAGATTGCCACCTTGCAATGGTAAAAATCATATTCTCTAC 379
|||| | ||||| ||||| |||||||| || |||||| |||| ||||| ||||||| ||
Sbjct 282 TGATATATTGAAGACTGGTAAAGATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCAC 341
Query 380 ATATGACTATAAAAATATTGCATCTA-AGGCTATTCCAAAAAGTAAACAGGCATGGAACG 438
||| ||||||| || ||||| | || | |||||||||||||||||| ||||||| |
Sbjct 342 GGATGGGTATAAAAGTAAAGCATCCAGAG-CAATTCCAAAAAGTAAACAGACATGGAATG 400
Query 439 ATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTT 484
||||| ||||||||||||| | | ||||||||| |||||| ||||
Sbjct 401 ATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCCCCGGTCACTTT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5