BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936215

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) ...   448    3e-125


> AT2G04031.1 | Symbols:  | Protein of unknown function (DUF784) 
| chr2:1304160-1304779 REVERSE LENGTH=620
Length=620

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 328/370 (89%), Gaps = 4/370 (1%)
 Strand=Plus/Plus

Query  134  AGACATATCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGA  193
            ||||||||||||||||||| |||||| | |||||||||| ||||| |||| |||||||||
Sbjct  96   AGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGA  155

Query  194  GCTTGCTCACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAA  253
            |||||||||||  || ||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct  156  GCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAA  215

Query  254  ATGCGAGGATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGATGAATG  313
            |||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct  216  ATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATG  275

Query  314  TTGTCGTGATGTTTTGAATACTGGCAAAGATTGCCATCTCGCAATGGTAAAAATCATATT  373
            ||||| |||| | ||||| |||||||||||||| || || ||| |||| |||||||||||
Sbjct  276  TTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATT  335

Query  374  CTCTAC-ATATGACTATAAAAATATTGCATCTAAGGCTATTCCAAAAAGTAAACAGGCAT  432
            ||| || | |||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct  336  CTCCACGA-ATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACAGACAT  394

Query  433  GGAACGATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTTCGAGCCG  491
            |||| |||||| ||||||||||||| |   | |||||||||||||||||||||||| || 
Sbjct  395  GGAATGATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCTCCGGTCTCTTTCGAACCT  453

Query  492  TAAACTAATA  501
            ||||| ||||
Sbjct  454  TAAACCAATA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5